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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGAGAATTTGGTGGTTCAGACTTTGGTGGGTATCCTACTTTGAAGCAGAGAAATGATTCTTTTGATATACGAGAGTCGATGACTGTGCACTGTGGgtatgttttgctttttgttgaatgtttccctaataagtaacatctatacccaccaaggaatgttctttgtggttatagttgtctgcgctagtaattaagcattcttgtaatttcttactgacatgaattcattctccatcttcaataatgaatataccaatcag

Basic information

species Glycine max
transcript GLYMA07G31680.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31680.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g45490.1 (Oryza sativa), 5'ss of exon 3
-GAGATGGAGAATTTGGTGGTTCAGACTTTGGTGGGTATCCTACTTTGAAGCAGAGAAATGATTCTTTTGATATACGAGAGTCGATGACTGTGCACTGTGGgtatgtt--ttgctttttgttgaatgtttccctaataagtaacatctatacccaccaaggaatgttctttgtggttatagttgtctgcgctagtaattaagcattcttgtaatttcttactgacatgaattcattctccatcttcaataatgaatataccaatcag
  |  |    || |  | || || |  ||||||||| ||||  || || ||||||||||| | |||||||| ||  | ||||| |||||||| ||||||||||| |||  |||| | || ||     | |   ||||    ||| |||       ||||        |||  ||| |  | | || |  |||   ||| ||    | ||||  | | |||                                               
CAAATTTCTCAAATCAG-GGCTCTGTATTTGGTGGGCATCCATCTCTGGAGCAGAGAAATAAATCTTTTGACATTAGTGAGTCTATGACTGTCCACTGTGGgtaggttacttgcatcttcttacccatatt--taatccagaacttctg------ccaaaa------cttaatggctgaaat-gtgtatgctg--aatgaaatgat-ttgtgctgttttatcag-------------------------------------------

upper sequence: GLYMA07G31680.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGATGGAGAATTTGGTGGTTCAGACTTTGGTGGGTATCCTACTTTGAAGCAGAGAAATGATTCTTTTGATATACGAGAGTCGATGACTGTGCACTGTGGgtatgttttgctttttgttgaatgtttccctaataagtaacatctatacccaccaaggaatgttctttgtggttatagttgtctgcgctagtaattaagcattcttgtaatttcttactgacatgaattcattctccatcttcaataatgaatataccaatcag
||||   ||| ||||| || ||||| |||||||| |||||||||||||| || || |||||||||||||| ||   |||  | |||| ||| || |||||||  || |  |||| ||      |||| | |     ||    | | |  |       |||     |||||| | ||  |||| | |   ||                                                                         
GAGAGACAGAGTTTGGAGGGTCAGATTTTGGTGGTTATCCTACTTTGAAACATAGGAATGATTCTTTTGACATTAAAGAAACAATGAGTGTACATTGTGGgtgagtat--ctttgtggccttggtttacttcccctgtcttctttttttc-------gaa-----tttgtgttgatgattgt-tccatcag-------------------------------------------------------------------------

upper sequence: GLYMA07G31680.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 3
GAGATGGAGAATTTGGTGGTTCAGACTTTGGTGGGTATCCTACTTTGAAGCAGAGAAATGATTCTTTTGATATACGAGAGTCGATGACTGTGCACTGTGGgtatgttttgctttttgttgaatgtttccctaataagtaacatctatacccaccaaggaatgttctttgtggttatagttgtctgcgctagtaattaagcattcttgtaatttcttactgacatgaattcattctccatcttcaataatgaatataccaatcag
 || ||    |||||| || || ||||||||||| |||||| || || | ||| |   | |||||| ||||||| |||| || |||||||||||||| ||||||| |     |||| ||     |||   |  | | | |  |   || | |        | |  ||| |||   | ||| ||   || | |  ||||     ||| |  |                                                     
AAGGTGATTCATTTGGCGGCTCTGACTTTGGTGGATATCCTTCTCTGGATCAGCGGGCTAATTCTTATGATATAAGAGAATCAATGACTGTGCACTGCGGgtatgatgaaggttttttt-----ttttttttttcaattattttcttaactatttg----tataatttctggaggttgttttccttgcaaat--ttaactggacttattgt-----------------------------------------------------