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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTTGAAGTCATCAATGATTTAGGATTGGATACTCTTACTTTCTTGGCTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCTgtaagaagttcttggagttataccttttttttccagttttctttaagttatgctcttgaaattatgataatctctcatcttaaaataatcataaccatca...

Basic information

species Glycine max
transcript GLYMA07G30360.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 2
TGCTGTTGAAGTCATCAATGATTTAGGATTGGATACTCTTACTTTCTTGGCTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCTgtaagaa-gttcttggagttataccttttttttccagttttctttaagttatgctcttgaaattatgataatctctcatcttaaaataatcataaccatca-
|| |||||||||||| |||||||||||||||||||| || || ||||| |||||||| ||  |  || | ||| ||||||||    | | ||| || ||||||||   | | || |   | |     | |||    | | |  |||  |||    |   | | ||| |  |       |   |||||||  ||    |    
TGGTGTTGAAGTCATTAATGATTTAGGATTGGATACCCTGACATTCTTAGCTGTGACTGTTATGGTTATTCCTGCATTCAAGATCATCAGAGCTAGCCCTgtaagcctgatattagtactttggtaatatttataggatattatta--ttaataccacaagactataagcacactgattagaaaaataaatatgcatacata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295068|gb|FG986787.1|FG986787
EST:     CTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCT                         ATACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATT
genomic: CTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCTgtaagaagtt ... ttattttcagATACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATT
EST: gi|213597656|gb|DB962566.1|DB962566
EST:     CTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCT                         ATACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATT
genomic: CTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCTgtaagaagtt ... ttattttcagATACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATT
EST: gi|209708250|gb|BW678620.1|BW678620
EST:     CTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCT                         ATACTTGGTTTCTTCTGTGCTG
genomic: CTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCTgtaagaagtt ... ttattttcagATACTTGGTTTCTTCTGTGCTG