1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCGGTGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGCCAGAGgtattggagtatagggaatgtggcatttatttttgagttattttttgaacctaatattaataatttgttattttctaattagaatgtgattagactcacttaatgctcactctgcatttgcttgtgtttgtag
species | Glycine max |
transcript | GLYMA07G28990.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGCCAGAG ATTGCTCAACACATCTTGCTTGACGCGCCGAGTCTTGCTTTCTTTACAACAEST: gi|17400364|gb|BM177146.1|BM177146
genomic: GGTGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGCCAGAGgtattggagt ... gtgtttgtagATTGTTCAACACATCTTGCTTGACGTGCCGAGTCTTGCTTTCTTTACAACA
EST: GGTGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGCCAGAG ATTGTTCAACACATCTTGCTTGACGTGCCGAGTCTTGCTTTCTTTACAACAEST: gi|209712879|gb|BW679156.1|BW679156
genomic: GGTGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGCCAGAGgtattggagt ... gtgtttgtagATTGTTCAACACATCTTGCTTGACGTGCCGAGTCTTGCTTTCTTTACAACA
EST: GGTGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGC-AGAG ATTGTTCAACACATCTTGCTTGACGTGCCGAGTCTTGCTTTCTTTACAACA
genomic: GGTGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGCCAGAGgtattggagt ... gtgtttgtagATTGTTCAACACATCTTGCTTGACGTGCCGAGTCTTGCTTTCTTTACAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGGTGTGTAGTTTTCATCTTCTTTCGGAATGTGCAGAGGTTGAAGCCAGAGgtattggagtatagggaatgtggcatttatttttgagttattttttgaacctaatattaataatttgttattttctaattagaatgtgattagactcacttaatgctcactctgcatttgcttgtgtttgtag
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGC