Sequence
atgc intronic sequence ATGC exonic sequenceCTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAGgtattgcatgaagcctctatcaactttaggaaatagtcattttcccaggttaggtggtatgttttctgaatcgaatatttctggcag
Basic information
species | Glycine max |
transcript | GLYMA07G26540.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g44340.1 (Oryza sativa), 5'ss of exon 3
CTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAGgtattgcatgaagcctctatcaactttaggaaatag-tcattttcccaggttaggtggtatgttttctga-atcgaatatttctggcag
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CTTACGGAAGAATTGACAAAGGTGGATGGGAAGCTGAAGCTTACAGAGTCTCTCCTCGAAAGCAAGgtaatggagcagccctattcttttcctctttcacagctcatattgtctcg------agaacagttactgatagcacacgatgctg-cag
upper sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 3
CTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAGgtattgcatgaagcctctatcaactttaggaaatagtcattttcccaggttaggtggtatgttttctgaatcgaatatttctggcag
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ATTACTGAAGAACTGTCAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAGgtattgcatgaaacc-cttccatttttctttataagttttgtgtgtgtgtgttttgcagttttgtcctaa-caattgttttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298197858|gb|HO039397.1|HO039397EST: CAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAG AATCTTGAAATTNNNNNNNTCAACGATGAAAAGAAAGCATCAATGGCAGCT
genomic: CAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAGgtattgcatg ... tttctggcagAATCTTGAAATTAAAAAAATCAACGATGAAAAGAAAGCATCAATGGCAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAGgtattgcatgaagcctctatcaactttaggaaatagtcattttcccaggttaggtggtatgttttctgaatcgaatatttctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG