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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTGCCTCCTGGCGTGCCCAAGCGCTACTCTGGATCATTAAATGCTTATTCAACAATTATGAGACAGgtatttgcgtatgacttgatatgatttgtgaaaatgggaagatctattcaatccttttcaggttataatcagttttgttcaatctgcttcctacacacag

Basic information

species Glycine max
transcript GLYMA07G17380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G17380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 4
TCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTGCCTCCTGGCGTGCCCAAGCGCTACTCTGGATCATTAAATGCTTATTCAACAATTATGAGACAGgta------tttgcgtatgacttgatatgatttgtgaaaatgggaa-gatctattcaatcct------tttcaggttataatcagttttgttcaatctgcttcctacacacag
 |||||||||||| |||||||| | |||||||||||||| ||||| ||||| |  ||||| || |||||||| ||||||||||| |||||  ||||||||||        ||||   |   |  |||| |||| | |   |    |  || |||| ||   |      ||| | ||  | |||   |||    ||| ||  ||  | |   ||
CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag