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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttgctgcatttgcttttgctattacattaacacaaactatttagcaaattttctgccagtacaatctcattggttgcaatatattttcacag

Basic information

species Glycine max
transcript GLYMA07G15930.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 3
GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttgctgcatttgcttttgctattacattaacacaaactatttagcaaattttctgccagtacaatctcattggttgc--aatatattttcacag
||| |||||||| |||||  | ||  | ||| | |||||| | ||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| ||| || |  |  |  |   ||||      ||  |  | |     |   ||  | | |   |    || ||| |   |    |   ||||  |   || | |     
GAAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAGgtttgtactgttaaactcac---atttagagc-gcagtagcctgtgttcgt-cttctcatcctgtgcattggcagaatgttacgttcatttgcttagcgtagtat-----

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttgctgcatttgcttttgctattacattaac-acaaactatttagcaaattttctgcca--gtacaatctcattggttgcaatatattttcacag
||| |||||||| |||||  | || || ||| | |||||| | |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||| |||| | |     |  | || |||  | | ||||| |  | |   || | | |   |  | ||||| |  ||   |||    | ||    | | |         
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagactt-cttgagat-ttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa---------

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 3
GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttg--ctgcatttgcttttgcta---ttacattaac-acaaactatttagcaaattttctgccagtacaatctcattggttgcaatatattttcacag
||| |||||||| || ||  | || || ||| | |||||| | |||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||| || | || | ||  ||| ||| |  ||    |   ||||| |  | |   || | | |   |  | ||||| | |      |  | |   ||               
GAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAGgtttgtactttgtattatgttctgaattagacttcttgagatttacactgcccatctacaactgaaggatgtgtctgcaattgtttgattctcgacggct--------------

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 5'ss of exon 3
GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttgctgcatttgcttttgctattacattaacacaaactatttagcaaattttctgccagtacaatctcattggttgcaatatattt-tcacag
||| |||||||| |||||| | ||||||||| |||||||||||||||||||||| ||||| |||||||| ||  |||| || || |||| |||||| ||||| | | |  | |  | || |  |  || | ||||  | |  |||       ||  | |    | || | ||   |  ||| | | |   || |  |||  | | ||||
GAAGATGATGCACAAGTATATAGGCTCTGATGTCACATCAATGGTGACACTTCCTGTTATGATTTTTGAGCCGTTGACTATACTGCAGAGAATGGCAGAGgttttttcatttt--tgtgtttaaactg-tattgcagtaatgtta----gggctgctcaaggcagtt-cagctgattgaatgttactaactgtatgatacctgttacag

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 3
lower sequence: PP1S148_87V6.1 (Physcomitrella patens), 5'ss of exon 3
GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttgctgcatttgcttttgctattacattaacacaaactatttagcaaattttctgccagtacaatctcattggttgcaatatattttcacag
|||||||||||| |||||  | || ||||| || || |||||||||||||||||||| ||||| ||||| || ||||| | ||||||||| ||||||||||| | |  |   |  |||  ||| |   |      ||||    |  |   ||   || || | |     ||    | | |||      |||||||  | | |  ||  
GAAAATGATGCACAAGTACATAGGTTCTGACATTACTTCAATGGTGACACTTCCAGTCATCATATTTGAGCCCATGACTACGCTTCAGAAGATGGCTGAGgtatttttttactttttttgtgcgtggccgcaaaatatt----tggctttaatctttgagtacaaaa--tgattctgctatccgtgatgttgcaaattctgtatac--

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 3
lower sequence: EFJ19778 (Selaginella moellendorffii), 5'ss of exon 3
GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttgctgcatttgcttttgctattacattaacacaaactatttagcaaattttctgccagtacaatctcattggttgcaatatattttcacag
|||||||||||| |||||| |||| || ||  |||| || ||||||||||| |||||| | |||||||| || ||||| ||||| || | |||||| |||||       |  |  ||   ||         |    |||  ||  |||                                                            
GAAAATGATGCACAAGTATATTGGATCGGACGTCACTTCCATGGTGACACTGCCAGTTTTGATTTTTGAGCCCATGACGATGCTCCAAAGAATGGCCGAGgtaaagaaaaactttttccttgaggcaaagctgtaaattctatctacag-----------------------------------------------------------

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 3
lower sequence: EFJ08612 (Selaginella moellendorffii), 5'ss of exon 3
GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttgctgcatttgcttttgcta-ttacattaacacaaactatttagcaaattttctgccagtacaatctcattggttgcaatatattttcacag
|||||||||||| |||||| |||| || ||  |||| || ||||||||||| |||||| | |||||||| || ||||| ||||| || | |||||| |||||    |  | |   ||| ||  ||       ||  | ||  ||  |||                                                            
GAAAATGATGCACAAGTATATTGGATCGGACGTCACTTCCATGGTGACACTGCCAGTTTTGATTTTTGAGCCCATGACGATGCTCCAAAGAATGGCCGAGgta-aagaaaaactttttccttgatgcaaagctgtaaattctatctacag-----------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254327936|gb|GR834901.1|GR834901
EST:     TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAG                         CTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
genomic: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgcta ... attttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
EST: gi|254332080|gb|GR846283.1|GR846283
EST:     TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAG                         CTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
genomic: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgcta ... attttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
EST: gi|19053342|gb|BM732009.1|BM732009
EST:     TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAG                         CTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
genomic: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgcta ... attttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA