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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCTCACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAgtgagtgccaaagtttcttggttgaattcatttttacatgtcagttgtaacttggatagcttctcattcttttagaatacaaatttgcttggatgatggt...

Basic information

species Glycine max
transcript GLYMA07G14260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G14260.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0021g01870.t01 (Vitis vinifera), 5'ss of exon 3
CGGCTCACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAgtgagtgccaaagtttcttggttgaattcatttttacatgtcagttgtaacttggatagct-tctcattcttttagaatacaaatttgcttggatgatggt----
| ||| | ||| | |||||||| |||||||| ||||| |||||||||||||||    || | ||||| |||||||||||||||||||||||||| ||||||| |||    ||   | |   ||     | | ||||||  || | | |   | ||| |  | |||  ||||| |    | |||    || || ||  |  |    
CTGCTAATTGGATAGTGGTGCATAGAGCTATGATGGCAATAAAAGATGTGGATTCATTGTTCTCTTCTTTGGATCCTGAGTACTATGATATCCTCATGAAgtaagt---taaacctttgtattcgtcacttctttacaattctgattt--ttaggagaattatctttttcttatcttgttcaatcaagcatgaatattaattgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337509|gb|BI498165.1|BI498165
EST:     GATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAA                         GTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATG
genomic: GATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAgtgagtgcca ... tttgccatagGTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATG
EST: gi|298165164|gb|HO011213.1|HO011213
EST:     GGTGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAA                         GTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATG
genomic: GATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAgtgagtgcca ... tttgccatagGTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATG
EST: gi|12690291|gb|BG156627.1|BG156627
EST:     GATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAA                         GTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATG
genomic: GATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAgtgagtgcca ... tttgccatagGTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATG