Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAGCTTCAGAGCAGGATTACTTTGAACAGCTTTCAAGCTCATTCAGgttagtccaatcctgatattcttgtggtagatgaacattgcttcatgttgttcctttcttttgttgatttttaaaccatcaatgagcacatccttttagggtcattgtgtgattggatcag
Basic information
species | Glycine max |
transcript | GLYMA07G10810.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G10810.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0106g00380.t01 (Vitis vinifera), 5'ss of exon 4
TCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAGCTTCAGAGCAGGATTACTTTGAACAGCTTTCAAGCTCATTCAGgttagtccaatcctgatattcttgtggtagatgaacattgcttcatgttgttcctttcttttgttgatttttaaaccatcaatgagcacatccttttagggtcattgtgtgattggatcag
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TTTTAACAACTCCGCAACTACATTGGATGGTTCGGGCTAGGAATAAGAGCATGAAAGCTTCTGAAGTTGACTACTTTGAACAGCTCTCAAGCCCCTTCAGgt-----caatttgtgtatt----tagtgggtacat-ttgttagaagtggat----------gatgtttctaaaaatttca-------------tgtaaggtctttatgcaattgggtag-
upper sequence: GLYMA07G10810.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0012g00620.t01 (Vitis vinifera), 5'ss of exon 4
TCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAGCTTCAGAGCAGGATTACTTTGAACAGCTTTCAAGCTCATTCAGgttagtccaatcct------gatattcttgtggtagatgaacattgcttcatgttgttcctttcttttgttgatttttaaaccatcaatgagcacatccttttagggtcattgtgtgattggatcag
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TTTTAACAACTCCACAACTACATTGGATGGTTCGGGCTAGGAATAAGGGCATGAAAGCTTCTGAAGTTGACTACTTTGAACAGCTCTCAAGCTCCTTCAGgtcagtttgtgtatttattgggtacatttgttagaaatggatgatgtttc----taaaaatttcatataa-ggtctttatgcaattgggtag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23730897|gb|BU763554.1|BU763554EST: ATGAAAGCTTCAGAGCAGGATTACTTTGAACAGCTTTCAAGCTCATTCAG GTGCTTAGTGGATTTGATCCCAGCTGAAAAATGTAAGTTTGATGGGGTGAA
genomic: ATGAAAGCTTCAGAGCAGGATTACTTTGAACAGCTTTCAAGCTCATTCAGgttagtccaa ... attggatcagGTGCTTAGTGGATTTGATCCCAGCTGAAAAATGTAAGTTTGATGGGGTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAGCTTCAGAGCAGGATTACTTTGAACAGCTTTCAAGCTCATTCAGgttagtccaatcctgatattcttgtggtagatgaacattgcttcatgttgttcctttcttttgttgatttttaaaccatcaatgagcacatccttttagggtcattgtgtgattggatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA