Sequence
atgc intronic sequence ATGC exonic sequenceGGACCACAATATGTGTGCACAAACTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACAgtaagtccttacaagatttttgtacactgatcttgagttgaacattttgagttgaacacatgtttttatggttcatgatgacttgctttgctgatcagca...
Basic information
species | Glycine max |
transcript | GLYMA07G09750.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G09750.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G043056_T01 (Zea mays), 5'ss of exon 3
GGACCACAATATGTGTGCACAAACTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACAgtaagtccttacaaga---tttttgtacactgatc----------ttgagttgaacatt--ttgagttgaaca-catgtttttatggttcatgatgacttgctttgctgatcagca---------------------------------------------
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GGACCACAATATGTCTGCACAAATTTCTGGACCTTTGTTTGTACCAATTGCAGTGGATCACAgtaagtattttagggagccctcttttactttagtcaacctatttatcgagcttcactttctttttgtttaacaatatatcaatatatgccttgatggaatgaactgtccccaagggaaatacgttggttttttcctaatatagatcactttatttttctag
upper sequence: GLYMA07G09750.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G341732_T02 (Zea mays), 5'ss of exon 4
GGACCACAATATGTGTGCACAAACTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACAgtaagtccttacaagatttttgtacactgatcttga-gttgaacattttgagttgaacacatgtttttat-----ggttcatg--atgacttgctttgctgatcagca--------------------------------------------------------------
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GGACCACAATATGCCTGCACAAATTTCTGGACCTTCGTTTGTACCAATTGCAGTGGAGCACAgtaagtatttt--agtgtgccctcttttagtttagacgaccaatctatcgagccttcccttcttttttgtttaacagtatatggcatgatggagtgaattattgggcacaccagtcccctggtgaaatatgccagtctttttcctaatataaatcactttgttttcctag
upper sequence: GLYMA07G09750.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G13350.2 (Arabidopsis thaliana), 5'ss of exon 3
GGACCACAATATGTGTGCACAAACTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACAgtaagtccttacaagatttttgtacactgatcttgagttgaacattttgagttgaacacatgtttttatggttcatgatgacttgctttgctgatcagca
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GGACCACAATATGTTTGCACTACTTTCTGGACTTTTGTTTGTACCAACTGCAGTGGAATACAgtgagt--gtactttatcttctcatatt---cttgtgtagatggtgttcattggaa---atgttgtt-tgagatatg--catatgtatttttgaacag--
upper sequence: GLYMA07G09750.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g04210.t01 (Vitis vinifera), 5'ss of exon 2
GGACCACAATATGTGTGCACAAACTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACAgtaagtccttacaagatttttgtacactgatcttgagttgaacattttgagttgaacacatgtttttatggttcatgatgacttgctttgctgatcagca--------
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GGACCGCAATACGTGTGCACAAATTTCTGGACATTTGTTTGCACAACTTGTAGTGGGATACAgtaagtgct---aaattgcttatgtgtt--ttgtgacatgcacctccc---tctagctctcttttcaattgcacattttggcttatgtctaagattctgattgtaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209722104|gb|BW659319.1|BW659319EST: GTGTGCACAAACTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACA TCGGGAATTCACTCATCGAGTAAAATCAGTTTCAATGGCTAAGTTTACTTC
genomic: GTGTGCACAAACTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACAgtaagtcctt ... tgatttatagTCGGGAATTCACTCATCGAGTAAAATCAGTTTCAATGGCTAAGTTTACTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACCACAATATGTGTGCACAAACTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACAgtaagtccttacaagatttttgtacactgatcttgagttgaacattttgagttgaacacatgtttttatggttcatgatgacttgctttgctgatcagca
- - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA