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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCCTGGACAAGGGAACCTCAAATCCTTCATTGATGCTTTCTTTACCGCATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGGgtttgtttcctaatttcttcttcttggtgcactctcttggattccttgctttaatctagaatctgttgaagacttaaattttgatctttttcattctattcag

Basic information

species Glycine max
transcript GLYMA07G09270.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09270.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 3
TCGGCCTGGACAAGGGAACCTCAAATCCTTCATTGATGCTTTCTTTACCGCATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGGgtttgtttcctaatttcttcttcttggtgcactctcttggattccttgctttaatctagaatctg---ttgaagacttaaattttgatctttttcattctattcag
 |||  |||   | | || | |||||||||||| || ||| ||  | |||||  || ||||||| ||||| ||||||||| | || || ||||||||||||||||||    |   ||||   ||  |     ||| ||| | |  ||     |||| ||||  ||   || | ||| |||  |||  | | |||  ||| |  |||
ACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGCTCTCACTCCCGCACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgtt---cagcatcttgaactcag-----tcttttgcagtaatt-taagaatcaagaaaatgaaatttatgacataatgttt--tttcttttgttccacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452778|gb|BM954188.1|BM954188
EST:     CATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGG                         AGTTGTTAATGAACCACTTGAGAGCATTTCTGTGGATCTTGGTTTCCGTGG
genomic: CATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGGgtttgtttcc ... ttctattcagAGTTGTTAATGAACCACTTGAGAGCATTTCTGTGGATCTTGGTTTCCGTGG
EST: gi|5753610|gb|AI960897.1|AI960897
EST:     CATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGG                         AGTTGTTAATGAACCACTTGAGAGCATTTCTGTGGATCTTGGTTTCCGTGG
genomic: CATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGGgtttgtttcc ... ttctattcagAGTTGTTAATGAACCACTTGAGAGCATTTCTGTGGATCTTGGTTTCCGTGG
EST: gi|26058787|gb|CA801701.1|CA801701
EST:     CATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGG                         AGTTGTTAATGAACCACTTGAGAGCATTTCTGTGGATCTTGGTTTCCGTGG
genomic: CATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGGgtttgtttcc ... ttctattcagAGTTGTTAATGAACCACTTGAGAGCATTTCTGTGGATCTTGGTTTCCGTGG
EST: gi|192294070|gb|FG986159.1|FG986159
EST:     CATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGG                         AGTTGTTAATGAACCACTTGAGAGCATTTCTGTGGATCTTGGTTTCCGTGG
genomic: CATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGGgtttgtttcc ... ttctattcagAGTTGTTAATGAACCACTTGAGAGCATTTCTGTGGATCTTGGTTTCCGTGG