Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTACTTGCAAGTGTTGTATTTGTGCCAATATTTCAAAAGATTCCTGGAGgtaactaggttgccatgttttcttaatattggatgaaagaataacaaagttgtttgtctaaatgttatactttagtttgaatttgattaggcaccaaact...

Basic information

species Glycine max
transcript GLYMA07G08030.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGGATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTACTTGCAAGTGTTGTATTTGTGCCAATATTTCAAAAGATTCCTGGAGgtaactaggttgccatgttttcttaatattggatgaaagaataacaaagttgtttgtctaaatgtta--------tactttagtttgaatttgattaggcaccaaact---------------------------------------------------------------------------------
||  ||||||| ||||| |||||||||||| |  | |||||||| || ||||| ||  ||||||||||  ||||||| || |||||||||||||| |||  |    | || |  |  | ||   |  |   ||  ||    | ||||| |     ||         | ||  | |||  || |  | |     ||||                                                                                   
GTCAATGAGGAAGAAGCTTCCCTCTTTGACTTTTTGTGGTTACTGCTAGCAAGCGTCATATTTGTGCCTCTATTTCAGAAAATTCCTGGAGgtaagtagtatttttttttcttcttttgttaattctatccattgcattactatttgtttcccctttccctcaaactcctacaatttctatgttctcatcagtcaaaaacattttcagttctggtctcgcaatcatgttgcatagagatttatgtgccatcttgatggcttcatctgctgcaatgtatag

upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 2
GTGGATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTACTTGCAAGTGTTGTATTTGTGCCAATATTTCAAAAGATTCCTGGAGgtaactaggttgccatgttttcttaatattggatgaa--agaataacaaagttgtttgtctaaatgttatactttagtttgaatttgattaggcaccaaact
 || ||||||| ||||| ||||| ||||||||| | |||||||| || ||||||||| |||||||||| ||||| || || ||||||||||||||||   ||    |  ||  | |        ||||   || ||  |   || ||| | | ||||| |||   ||  |  | ||| |  |       |  |
ATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAGgtaactgaattcttgtacttggtcatctaactctgaactggattattattattattttttttaatgtgatatcatacat--acttttagcatttgggtattt