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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatcttgtattattgaatattgctgcgaaactctataccttgagtagtttgccttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcag

Basic information

species Glycine max
transcript GLYMA07G07540.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07540.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G053764_T03 (Zea mays), 5'ss of exon 3
GTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatcttgtattattgaatattgctgcgaaactctataccttgagtagtttgccttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcag
|||| ||||| || ||||| || ||||| ||||| |||||||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||||||| || ||  ||  |  |  | ||||  |      ||   |   ||||      ||| | | |||||  ||        |   || || |||| ||    | |||     |||
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcattatg-gtcttaaactattttt------cttattttattgaagttcatgcatggagttaacattt----ccttacctgttcttatttgactgcaaaatg----cag

upper sequence: GLYMA07G07540.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
GTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaa-tcttgtatt--attgaatattgc--tgcgaaactctataccttgagtagtttgccttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcag
|| | ||||  || || || || ||||||||||| |||||||| ||||| || || || || || ||||||||||| |||||||||||||| ||||| |||| || | | ||| | |  ||    | || |  ||  ||  || |   | | |  | | |  ||  |    | |    ||  ||  ||  | | |   |                   
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaatctagctcctaaccactcctgga--tgaatgcaacc-tgcag-------------------

upper sequence: GLYMA07G07540.3 (Glycine max), 5'ss of exon 2
lower sequence: AC149818.2_FGT006 (Zea mays), 5'ss of exon 3
GTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaag-aatcttgtatt--attgaatattgc--tgcgaaactctataccttgagtagtttgccttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcag
|||| |||||  | || || ||  ||||||| || |||||||| ||||| || || || || || ||||||||||| |||||||||||||| || || |||| || | | ||| | |  ||  | | || |  ||  ||| || |   |   |  | | |  ||| |    | ||   |   ||  ||  | | |   |                   
GTGTATGGAAGATTAGAGTAGAATTGCCAGACGCATATCCTTACAAATCCCCATCGATCGGTTTCATCAATAAGATATATCACCCAAATGTCGACGAAATgtgagtagttttgaactcaatgaactgttaccttgtcaaattcaaccacgacaacaatctagcttctaaccacttctgg--ctgaatgcaaac-tgcag-------------------

upper sequence: GLYMA07G07540.3 (Glycine max), 5'ss of exon 2
lower sequence: PP1S161_122V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatcttgtattattgaatattgctgcgaaactctataccttga--gtagtttgccttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcag
|    |||||| |  | |||||  |||| ||||||||||| || |||||||||||||| || ||| | || | |||||  || ||||| || ||||||||||||||      | |          |  | |||     | |   | |   ||| ||| |||  |  |  |  |  | ||| |||    |  ||     | |   | |        
GGACCTGGAAAATCCGAGTTGAATTGCCCGATGCTTATCCCTACAAATCTCCTTCCATTGGGTTTGTGAACAGGATCTTCCATCCAAACGTGGATGAGATgtaagatgtccatgtc---------tagttcgatctgttgtttttcggtcgtaatttacctcatagttctggtgtgtattctgtaacgttctaccctttttcgcacttc------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023135|gb|CX709876.1|CX709876
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|31464781|gb|CD406794.1|CD406794
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCTAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|14011775|gb|BG726697.1|BG726697
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|15812810|gb|BI785085.1|BI785085
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|151400703|gb|EV270517.1|EV270517
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|23730924|gb|BU763571.1|BU763571
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT