1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatccttttgtttattgatatcttaattaggttaattcaggcatggagcgatggtttagtgaatgggaataacgataattgattattactgcaattaaa...
species | Glycine max |
transcript | GLYMA07G06590.1 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT ---------GACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATEST: gi|9203772|gb|BE329996.1|BE329996
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATEST: gi|37996752|gb|CF808341.1|CF808341
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATEST: gi|10844117|gb|BF067454.1|BF067454
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATEST: gi|8282719|gb|BE020280.1|BE020280
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATEST: gi|10847099|gb|BF069865.1|BF069865
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATEST: gi|10845936|gb|BF068951.1|BF068951
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATEST: gi|15815279|gb|BI787554.1|BI787554
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatccttttgtttattgatatcttaattaggttaattcaggcatggagcgatggtttagtgaatgggaataacgataattgattattactgcaattaaa
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC