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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGGAGCGCCTATGATTTTCAATTGTgtaagttctgattctggaaaagaatactggttgcttcattttctacaataatgctattgttttctatatttactttagaagaactctagggtgtaaccaa...

Basic information

species Glycine max
transcript GLYMA07G05390.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344222|gb|GR851025.1|GR851025
EST:     GACCTGGAGCGCCTATGATTTTCAATTGT                         GTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
genomic: GACCTGGAGCGCCTATGATTTTCAATTGTgtaagttctg ... ctatttgcagGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
EST: gi|17400209|gb|BM176991.1|BM176991
EST:     GACCTGGAGCGCCTATGATTTTCAATTGT                         GTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
genomic: GACCTGGAGCGCCTATGATTTTCAATTGTgtaagttctg ... ctatttgcagGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
EST: gi|254315134|gb|GR830127.1|GR830127
EST:     GACCTGGAGCGCCTATGATTTTCAATTGT                         GTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
genomic: GACCTGGAGCGCCTATGATTTTCAATTGTgtaagttctg ... ctatttgcagGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
EST: gi|254344223|gb|GR851026.1|GR851026
EST:     GACCTGGAGCGCCTATGATTTTCAATTGT                         GTTGT-GAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
genomic: GACCTGGAGCGCCTATGATTTTCAATTGTgtaagttctg ... ctatttgcagGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
EST: gi|48574801|gb|CO036084.1|CO036084
EST:     GACCTGGAGCGCCTATGATTTTCAATTGT                         GTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
genomic: GACCTGGAGCGCCTATGATTTTCAATTGTgtaagttctg ... ctatttgcagGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
EST: gi|209698574|gb|BW652427.1|BW652427
EST:     GACCTGGAGCGCCTATGATTTTCAATTGT                         GTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
genomic: GACCTGGAGCGCCTATGATTTTCAATTGTgtaagttctg ... ctatttgcagGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
EST: gi|151399288|gb|EV269159.1|EV269159
EST:     GACCTGGAGCGCCTATGATTTTCAATTGT                         GTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG
genomic: GACCTGGAGCGCCTATGATTTTCAATTGTgtaagttctg ... ctatttgcagGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAG