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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgtttcatactgttacatttcttatattatttatgctgagctctcatgttcagaaagaagaaaaagattatgttgaacccttgctatatcata...

Basic information

species Glycine max
transcript GLYMA07G05170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G50430.2 (Arabidopsis thaliana), 5'ss of exon 3
GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgtttcatactgttacatttcttatattatttatgctgagctctcatgtt-cagaaagaagaaaaagattatgttgaacccttgctatat-cata-
|| ||||| || |||||||| ||||||||||| |||| ||| |||||||| |||||||||| | | ||   || ||  | |  |  | || |||||  |  ||| ||  |||     |   |      |  ||||  | |  || ||| ||   | | 
GAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGGCgtaagtct-tatctggctatt-taatgttccttttctttattttctgctttctagttattctattgaaggtttggctatgg-ggatactggctttaggtacat

upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgtttcatactgttacatttcttatattatttatgctgagctctcatgttcagaaagaagaaaaagattatgttgaacccttgctatat-cata----
|| ||||| || |||||||| ||||||||||| |||| ||| ||||| ||||||||||||    || | ||   ||   | |      |||||  |||||   ||   |  ||     |  | ||  | || | |  |    ||   |||   |||    
GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagcc--ttccctatctttttttcttaatctttattcctgctggcttcctgtaatc---ctgttgcaagcgtttctataaagatgttatgataagtatatatg

upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 5'ss of exon 4
GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgtttcatactgttacatttcttatattatttatgctgagctctcatgttcagaaagaagaaaaagattatgttgaacccttgctatatcata-
|| |||||||| ||||| || || || ||||| |||| ||||||||||||||||||||||||   |  || || |  |  ||    |  || ||    | |  | || | ||    ||   |||     |   | | |  |  | || |     | 
GAACCAGTTTCCCATGTGGTTGCCCGCCCTTCCCCAAATGATATTCTTGAGTGGCgtaagttgcatctat-ctctatctctttgctttctacttcaattaaattttccttttagagaaactgaaccttttctagataaggctatactgtgattgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193518256|gb|FK476597.1|FK476597
EST:     GATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: GATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|213589359|gb|DB961692.1|DB961692
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|120495095|gb|EH223262.1|EH223262
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|24205463|gb|BU964716.1|BU964716
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|207707971|gb|GD692496.1|GD692496
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|9902562|gb|BE611593.1|BE611593
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|7692130|gb|AW760244.1|AW760244
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|298173240|gb|HO020224.1|HO020224
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|298163944|gb|HO013589.1|HO013589
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|120491908|gb|EH220075.1|EH220075
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|193440118|gb|FK408519.1|FK408519
EST:     TGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: TGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|9264559|gb|BE352706.1|BE352706
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG