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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACGGGTCATGGCAAAATCTCATGCTAGAGAACCAGTCCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATACCGTGGTGTTACAAGgtaggagtaatagattttaatgttttttttaattgttgcatggtttagtgctttgtttattttgatgaattttgctcttttttcttttcgtggttcctggattttgttag

Basic information

species Glycine max
transcript GLYMA07G04260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G04260.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g01370.t01 (Vitis vinifera), 5'ss of exon 3
GGAAACGGGTCATGGCAAAATCTCATGCTAGAGAACCAGTCCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATACCGTGGTGTTACAAGgta---ggagtaatagattttaatgttttttttaattgttgcatggttt-agtgctttgtttattt--tgatgaattttgctcttttttcttttcgtggttcctggattttgttag
                                 ||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||||| || |||||     || || | ||||||||  |||| ||   | ||   ||     |    |||| |   |   ||||||| |||| | |                                
---------------------------------AACCAGTTCCTCGGAAATCAATTGATACTTTTGGGCAAAGAACTTCTCAATATCGTGGTGTAACTAGgtattgaaagaaacaaattttaattcttttcttttcttttctttgaagagaaaattttgatgggtgggtgatgaaatttgttttag------------------------------