ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattctaaattgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttgcag

Basic information

species	Glycine max
transcript	GLYMA07G03890.2
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 5

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattctaaattgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttgcag
|| ||||| ||||| |||||||||||| ||||||| ||||| ||||| || |||||||| ||  ||||||||||||| ||  ||               |  |  | | ||   | | | ||| ||||| | |   ||   ||||  |        |    ||  ||| || ||||||         
AATCTCTATTGGGCCGATAGTGGTGATTTAGTGACAATTGCAAGTGACACCTCATTCTACATTTTGAAGTACAATgtaagttttt--------------ctgcattttgttggctctgtagttcaatga-tgtaacatc-tacttgatgtaactataacacaacaattataccttccag--------

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgag------gatt--ctaaattgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttacta----gtgaagcactgtaaacattttaacttccactgttgcag
||||| || ||||||||||| ||||| |||||  | || || ||||||||||||||||| || ||||||||||| || ||       |||  ||||||  ||           ||| || |  | |||  |   | | |   |||  |  |||  |      ||       || |   || ||| ||    |  | |||
AACCTTTATTGGGCTGATAGCGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATACTGAAGTACAACgtaagttattgtattatctaaatgttcattatgttatttcttttctcctcttgaatgtgttattgcgtgaaagttctttttttaccatggcatgaagttatgtttgtaatttgtgttcctacag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattctaaattgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttgcag
||| | |||||||||||||||||||| |||||  | || || ||||||||||||||||| ||||| ||||||||||| || ||  |  || |||           | |||| | | |||       |    | ||  ||   | |     |  |  |    ||  | | | |  |   || ||  ||
AACGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATCCTCAAGTACAATgtaag-atattgtatcgtcaaatgattat-tatcttgtttctttttccttttacccaccttgtgatgcatggcgttata--aacaaaatgactatgatatgtgctttt-tag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgagg------attctaaattgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttgcag
||  | |||||||||||||||||||| |||||  | || || ||||||||||||||||| ||||| ||||||||||| ||       || || || ||        |    |   || |  || |  || |   |    ||  ||    |    | |  | |||   |     |||    |   | |      
AATGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATCCTCAAGTACAATgtaagatattgtatcctcaaatgattattatctagtttctttttccttct--tttacccacctccttgtgatgatggggattataacacaaaacgagatttgtgctttgcag------

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattctaa--attgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttgcag---------------------------------------
|| || ||||||||||| ||||||||| |||| || ||||| |||||||| |||||||| ||  |||| || ||||||||   | | |   |  |     ||     ||  ||    |||  |||| ||  |    |  | |  |||  || ||    | |   || |  |||  || |   ||   |                                        
AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACGTCATTCTACATTTTGAAATATAATgtgagttctgtcactgtcttaattgcctatgttcagttgacctttcagttacatccactattttttgtcctttttaatgtcaaattaagaagaaattatttttc-tggtcaaattgaaatgtattaatacaaaagtttccttttatcttgtag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgagga-----------ttctaaattgtcc----cccccccccctctcttatgtttttggttaaatgaatatctgatggcac-ttactagtgaagcac----tgtaaacattttaacttccactgttgcag---------------------
|| || ||||||||||| ||||||||| |||| || ||||| |||||||| |||||||| ||  |||| || ||||||||             || | ||||| |      |   |  ||| |||  |   |    | |  ||  | | | ||| ||  |||  |   || ||     | |   ||  |  || |  |||    ||                      
AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACGTCATTCTACATTTTGAAATATAATgtgagttctgtcattaccttattaattgcctatgttcagtcgacctttctgttacatccactgatttgtgtcttttatgtcaaattaagaagcaatcattttttctggtcaaatggacatgtactaacacaaaagtttccttttatcttgtag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 18

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggat----tctaaa--ttgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttactagt-gaagcactgt---aaacattttaacttcca--ctgttgcag
|| || || ||||| || ||||||||||||||  | ||||| ||||||||||||||||| ||||| |||| ||||||||||||    | ||||  |||        ||    ||||| |   |||  |||  | | | ||  |   |  || ||  | ||  ||  ||   || |  |||   | |    ||| || ||
AATCTTTATTGGGCGGACAGTGGTGATCTAGTTGCAATTGCCAGTGATACATCATTCTACATCCTTAAGTTCAATgtgaggatcttttttaaaccttggtagtgagccagaactcttgtacatttccttagtttattttcctagtactgttgctgttcgagacatggttttaagctgttttcttactgttctgctgtag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattctaaattgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttgcag
|| || || |||||||| ||||||||| ||||  | |||||||||||||| |||||||| ||| |||||||||||||||| ||       ||| |  || |      ||   | || ||  || | |     | |  ||| | |    |       ||| |     |  |  ||   || |      
AATCTTTATTGGGCTGAAAGTGGTGATTTAGTAGCCATTGCTAGTGATACGTCATTCTACATCTTGAAGTACAATgtgagaatc------tgttcaacctcaaatgttcagctattatt--ttcattcccactttcgtgg-attgttcaaaagcttactctggtgttcctcgctattacag------

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattctaaattgtcccccccccccctctcttatgtttttggttaaatgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttgcag
|| || || |||||||| ||||||||| ||||  | ||||||||||| ||||||||||| ||| |||| | ||| |||||||| ||          ||  |   | |||||||| | |   ||   |  ||||  |||  ||   | |    |||  ||   |||||  |   |||   |  | |||
AATCTATATTGGGCTGACAGTGGTGATTTAGTAGCCATTGCTAGTGACACATCATTCTACATCTTGAAATTCAACgtgaggatcctg--------tccaacaaacactcttatgctgtgaatt---tctatatgcgatt-catggattgtccaagtgct---aacatggtg--ttcttgttatacag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattctaaattgtcccccccccc-cctctcttatgtttttggttaa-atgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttg-cag---------------------
|| || || |||||||||||||||||| ||||| | ||||| |||||| ||||||| || ||| | ||||||||||| ||  ||||   || |     | |    | | ||| | |      | |  ||  || | | ||   |  || | ||    || |      |  |||| | || |  ||  ||                      
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 14

AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattct-aaattgtcccccccccccctctcttatgt--ttttggttaaatgaatat--ctgatggcacttactagt-gaagcactgtaaac--attttaacttccactgttgcag--------
|||||||| |||||||||||||| ||| | ||| | ||||| |||||||||||||| || |||||||||||||||||  |||| || ||||| |    || |    |  ||| |||  || |  ||   |  |||    ||     |   |  | | | ||||||| |  |  | || |||||    |  |  |         
AACCTCTATTGGGCTGATAGTGGGGATTTGGTGGCCATTGCCAGTGATACATCATTTTACATCCTGAAGTACAATgtatggatcctcaaattattaatcctctttttaacttgtgtaattctcctttcctctatagaattggccaaatgcatgatttggagcactgcattccaaattgaactttttttaatttaattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|254341657|gb|GR852794.1|GR852794

EST:     ATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAAT                         CATGATGTTGTTGCATCATATTTAGATAGTGGAGGGCCTGTAGATGAGCAA
genomic: ATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattc ... actgttgcagCATGATGTTGTTGCATCATATTTAGATAGTGGAGGGCCTGTAGATGAGCAA

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns