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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtcttattaccttttcctatttaaattgtataattttgttgtgtaagagaataactataagagtcacataccgttgattgtgcgaatggattcttt...

Basic information

species Glycine max
transcript GLYMA07G03680.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31476276|gb|CD418304.1|CD418304
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|14126582|gb|BG791020.1|BG791020
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|15812956|gb|BI785231.1|BI785231
EST:     TTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: TTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|31308540|gb|CD393743.1|CD393743
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|120496630|gb|EH224797.1|EH224797
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|193336442|gb|FK301590.1|FK301590
EST:     TATTCTTAGAAATAGACCACTACCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: TATTCTT-GAAATAGACCA-T-CCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192330937|gb|FK023110.1|FK023110
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|31306843|gb|CD392046.1|CD392046
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|58024911|gb|CX711652.1|CX711652
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtcttattaccttttcctatttaaattgtataattttgttgtgtaagagaataactataagagtcacataccgttgattgtgcgaatggattcttt

- AAGGAA