1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAGGTCTAGTGTTGCTAGCTTCAGTAGCAATAATTTATTGGATTTCACTTACAACAAGACAGACCATAGGAAGAACCAACTACCAGATCACACATCCGAGgtaagactcatgttcttattattcctttttataaataaatatatatatatatatatatatatatatatatatatatatattctctcatctagactctaga...
species | Glycine max |
transcript | GLYMA07G02120.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAACAAGACAGACCATAGGAAGAACCAACTACCAGATCACACATCCGAG TGTAATAGCACAGCCACTGGTGGAGTT-ACAAGAAGACTEST: gi|22522662|gb|BU081473.1|BU081473
genomic: ACAACAAGACAGACCATAGGAAGAACCAACTACCAGATCACACATCCGAGgtaagactca ... gcttttctagTGTAATAGCACAGCCACTGGTGGAGTTTACAAGAAGACT
EST: AGGAAGAACCAACTACCAGATCACACATCCGAG TGTAATAGCACAGCCACTGGTGGAGTTTACAAGAAGACTAAGAGTCAACCAEST: gi|213602541|gb|DB956561.1|DB956561
genomic: AGGAAGAACCAACTACCAGATCACACATCCGAGgtaagactca ... gcttttctagTGTAATAGCACAGCCACTGGTGGAGTTTACAAGAAGACTAAGAGTCAACCA
EST: ACAACAAGACAGACCATAGGAAGAACCAACTACCAGATCACACATCCGAG TGTAATAGCACAGCCANCTGGTGGAGTTTACAAGAAGACTAAGAGTCAACCEST: gi|13312684|gb|BG406335.1|BG406335
genomic: ACAACAAGACAGACCATAGGAAGAACCAACTACCAGATCACACATCCGAGgtaagactca ... gcttttctagTGTAATAGCACAGCCA-CTGGTGGAGTTTACAAGAAGACTAAGAGTCAACC
EST: CCAACTACCAGATCACACATCCGAG TGTAATAGCACAGCCACTGGTGGAGTTTACAAGAAGACTAAGAGTCAACCAEST: gi|209722357|gb|BW665843.1|BW665843
genomic: CCAACTACCAGATCACACATCCGAGgtaagactca ... gcttttctagTGTAATAGCACAGCCACTGGTGGAGTTTACAAGAAGACTAAGAGTCAACCA
EST: ACAACAAGACAGACCATAGGAAGAACCAACTACCAGATCACACATCCGAG TGTAATAGCACAGCCACTGGTGGAGTTTACAAGAAGACTAAGAGTCAACCA
genomic: ACAACAAGACAGACCATAGGAAGAACCAACTACCAGATCACACATCCGAGgtaagactca ... gcttttctagTGTAATAGCACAGCCACTGGTGGAGTTTACAAGAAGACTAAGAGTCAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGGTCTAGTGTTGCTAGCTTCAGTAGCAATAATTTATTGGATTTCACTTACAACAAGACAGACCATAGGAAGAACCAACTACCAGATCACACATCCGAGgtaagactcatgttcttattattcctttttataaataaatatatatatatatatatatatatatatatatatatatatattctctcatctagactctaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA