1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TACATTTGATGCATTAAAGACCTATGCTCCACAAATGGTTGAATTACTGGTTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattttttcaagtttctcttttctcagggactgatcttgtaattcttaggtcagcaagctcattcatcattttcttcagctaatgggcaggcttt...
species | Glycine max |
transcript | GLYMA07G01720.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGACTGCGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAG CTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAG-CEST: gi|21677763|gb|BQ630114.1|BQ630114
genomic: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattt ... attgaaatagCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
EST: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAG CTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGCEST: gi|16105244|gb|BI892984.1|BI892984
genomic: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattt ... attgaaatagCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
EST: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAG CTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGCEST: gi|14992042|gb|BI317715.1|BI317715
genomic: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattt ... attgaaatagCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
EST: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAG CTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGCEST: gi|7924477|gb|AW830503.1|AW830503
genomic: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattt ... attgaaatagCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
EST: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAG CTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGCEST: gi|15813703|gb|BI785978.1|BI785978
genomic: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattt ... attgaaatagCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
EST: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAG CTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGCEST: gi|120529700|gb|EH257834.1|EH257834
genomic: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattt ... attgaaatagCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
EST: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAG CTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGCEST: gi|19054199|gb|BM732866.1|BM732866
genomic: TTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattt ... attgaaatagCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
EST: GGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAG CTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
genomic: GGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattt ... attgaaatagCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCTAACAATCCCCAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACATTTGATGCATTAAAGACCTATGCTCCACAAATGGTTGAATTACTGGTTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAAGTCAATGAAGAGgtatttattttttcaagtttctcttttctcagggactgatcttgtaattcttaggtcagcaagctcattcatcattttcttcagctaatgggcaggcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA