ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST

Sequence

atgc intronic sequence ATGC exonic sequence

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttcagtcactggttaatgctgcccgaaatgcttgtggagcagaaatcttaacatttatgacttgtgattgttgtttcag

Basic information

species	Glycine max
transcript	GLYMA07G01440.1
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 3

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttcagtcactggttaatgctgcccgaaatgcttg---tggagcagaaatc---ttaacatttatgacttgtgattgttgtttcag------------
 | | |   ||  | || ||  | |||||    || ||  | |||   || |||||||| |||||||| || || || |||||||||||||| |||||||||  | | |  |      |  |  |      | ||  |    |||  ||  ||||    | |||| ||| |  ||  |  ||||                  
-AGCGCCAGTC--GGAGTGAACTTGAGAGACAAGATTACCCGATTGCCAGGCATCCTGAATTCCGTTACAAGACTGAATTTCAGAGTCATGAACCTGAGgta--tgtgaaacttaaaatggttttaattatagtgtctcccctggtccatgaatcagagtgacatatat-atctgccacagttggactgtataattttgata

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 3

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttcagtcactggttaatgct-gcccgaaa--tgcttgtggagcagaaatcttaacatttatgacttgtgattgttgtttcag----------------
 |   |   || || ||  ||||| |||||   || |||  | ||  ||| ||||||||||||||||| || || || |||||||||||||| |||||||||    |  |||     ||   | | | |||| |    |   | |  ||  | | | ||  || |   ||||||| ||  |                      
-AATGCTTGTCGAGGAGA-ACTTG-AGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAGgta--cgtgggtcttaaattggcgatagaccgatagtaacaatttgttcatgagtgtcaa--ttgacttcttgtgactgaggcactgagccatatctagcttgg

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 4

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgt-aattttcagtcactg-gttaatgctgcccgaaatgc-----ttgtggagcagaaatcttaacatttatgacttgtga---ttgttgtttcag-----
 |   |    ||   || ||  |||||||    ||   | |  ||| |||||| || |||||||| || ||||| || |||||||||||||| |||||||| |||   ||||   |  || | |       ||  | |     |||      ||   | || | |      |  || ||   | ||  | | |      
-AATGCCAGCCAG--AGAGAACTGGAGAGACAAGATGTTCCAGTTACTAGACACCCAGAGTTCCGCTACAAAACTGAATTTCAGAGTCATGAACCTGAGgttaataagcagtttttctgtcattttctttagaggttcctctattgccatatagttgtattgatacaagaaagctgagaagttggtgatgttaataaca

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 3

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgta-attttc--agtcactggttaatgctgcccgaaatgcttgtggagcagaaatcttaacattt-atgacttgtgattgttgtttcag--
   || |  || ||||  ||    ||||     || |||||||| || || ||||||||||| || || ||||| |||||||| || |||||||| |||||| ||| ||  |  || || ||| || |        |  ||||       |   ||| | |||| |  |  ||   || || ||  |   
---CATGCCTCTAGAAAAGATGCTGAGAAAGCTGATTATTCTATCAGCAGGCATCCTGAGTTTCGCTACAAAACTGAGTTTCAAAGCCATGAGCCAGAGgtatattctcgcaagcattgtttagtggtat------tatttgtcttatgaattacttgaaatttgacaaagtgatgttattattgaatag

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165418_T01 (Zea mays), 5'ss of exon 3

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgt-aattttcagtcactg-gttaatgctgcccgaaatgc-----ttgtggagcagaaatcttaacatttatgacttgtga---ttgttgtttcag-----
||  | |        || ||  |||||||    ||   | |  ||| |||||| || |||||||| || ||||| || |||||||||||||| |||||||| |||   ||||   |  || | |       ||  | |     |||      ||   | || | |      |  || ||   | ||  | | |      
CAGAATGCCAGCCAGAGAGAACTGGAGAGACAAGATGTTCCAGTTACTAGACACCCAGAGTTCCGCTACAAAACTGAATTTCAGAGTCATGAACCTGAGgttaataagcagtttttctgtcattttctttagaggttcctctattgccatatagttgtattgatacaagaaagctgagaagttggtgatgttaataaca

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttcagtcactggttaatgctgcccgaaatgcttg--tggagcagaaatcttaacatttatgacttgtgattgttgtttcag
      ||| | ||||| ||  | ||       || ||| | | |   || ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||      | ||| ||  | ||  |  |  |  |||  |  | |    ||||     || |||   | |  ||||| |  |||
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttgatttactctgttttcttcttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtt-taccag

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 5'ss of exon 3

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgta-attttcagtcactggttaatgctgcccg-aaatgcttgtggagcagaaat--cttaacatttatgacttgtgattgttgtttcag
|||   || || || | |||  | |||  || ||| ||  |  ||||    ||||||||||| || ||||||||||| |||||||||||||| || |||||| |||   | | |       ||    |     | |  |||||   |   |    || || |    ||  ||   ||   ||||||||
CATGGAGGGTCCAGGAAGGATCTTGAGCAGACGGATTACCCAGTTAG---GCATCCTGAGTTTCGATATAAAACAGAATTTCAGAGTCATGAACCAGAGgtacattaaaacttatcaccagatttcacttacgagtaattgtgttccttgagctactcaataagcttgcttttcaat--ctgtttcag

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 3

CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttcagtcactggttaatgctgcccgaaatgcttgtggagcagaaat------cttaacatttatgacttgtgattgttgtttcag--------------------
|||   ||||||||||||||  | ||||||||||||||  | |||||    ||||| || || ||||||||||| ||||||||||| ||||| ||||||||| || |   |||   |||| | ||||| ||| |   | || | ||    |      ||   |  | |    || | |||| ||   ||                     
CATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAG---GCATCCCGAATTTCGTTATAAAACTGAGTTTCAGAGCCATGAACCTGAGgtatttctt--tcatcagttactcctgcctgaagtttgtttgcaccaccctttgctcactaggctctgaaatgttttaattgatgccacattgcttattctctgtgctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|33389971|gb|CA853178.1|CA853178

EST:     GACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG                         TTTGACTATCTTAAGAGTCTGGAAATAGAAGAGAAAATTAACAAAATCAAA
genomic: GACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttca ... gttgtttcagTTTGACTATCTTAAGAGTCTGGAAATAGAAGAGAAAATTAACAAAATCAAA

EST: gi|207824963|gb|GD797179.1|GD797179

EST:     GACATCCTGAGTTCCGTTATAAAGCAGAGTTTCAGAGTCATGAGCCTGAG                         TTTGACTATCTTAAGAGT
genomic: GACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttca ... gttgtttcagTTTGACTATCTTAAGAGT

EST: gi|208092864|gb|GD886793.1|GD886793

EST:     GACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG                         TT-GACTATCTTAAGAGTCT
genomic: GACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttca ... gttgtttcagTTTGACTATCTTAAGAGTCT

EST: gi|208259705|gb|GE059735.1|GE059735

EST:     GACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG                         TTTGACTATCTTAAGAGTCTGGAAA
genomic: GACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttca ... gttgtttcagTTTGACTATCTTAAGAGTCTGGAAA

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments