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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaaggaaataaggaaacaactgagacaattagatttcatattggatgtaagggtgccttttctgactatgttacctttgtcttgccgtccattcgtttacgatattttcag

Basic information

species Glycine max
transcript GLYMA07G01260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01260.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g10050.1 (Oryza sativa), 5'ss of exon 3
AAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaaggaaataaggaaacaactgagacaattagatttcatattggatgtaagggtgccttttctgactatgttacctttgtcttgccgtccattcgtttacgatattttcag
| ||| |||||||| || || ||||| ||||||||||||||||| |||||||||||| | || ||  ||||||| ||||||||||||||||| |||||| ||  | ||    |   |    |     ||     |||| |        |  ||    ||||| ||   ||  |||     | || ||||   ||  || | |          
AGGGGACGTGATCTTATTGGCATTGCTGAAACAGGATCAGGGAAAACACTTGCTTACCTTTTACCTGCCATTGTTCATGTTAATGCTCAGCCGATTCTAGgtgcgaaatgttgcttatgtttct--taaccgattttcttggatacattctggacttcttttgtggtaat-ctactaacatttttccgtgtgtt-attaaag----------

upper sequence: GLYMA07G01260.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G143246_T01 (Zea mays), 5'ss of exon 3
AAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaagga---aataaggaaacaactgagacaattagatttcatattggatgtaagggtgccttttctgactatgttacctttgtcttgccgtccattcgtttacgatattttcag
|  || || || || || || |||||||| |||||||||||||| || ||||||||| | || ||  ||||||| ||||| ||||| |||||||||||  || || |     |     ||    |       | |    || | | |||  |   | |     ||||||  |  ||||  || | |||  ||  |                    
AGAGGCCGCGACCTTATTGGCATTGCAGAGACAGGATCAGGGAAAACTCTTGCTTACCTTTTACCTGCCATTGTTCATGTGAATGCGCAGCCTATTCTTTgtgagaacttgtttccccaatgcttttccttctcaaccatcttttgggaactccagctaaaaattctgaacac-ttacaattttgttgttgttgaag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193441190|gb|FK409983.1|FK409983
EST:     TGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAA                         ATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTG
genomic: TGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaaggaaat ... atattttcagATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTG
EST: gi|193512144|gb|FK467704.1|FK467704
EST:     ATTGTGCATGTTAATGCCCAGCCTATTCTAA                         ATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTG
genomic: ATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaaggaaat ... atattttcagATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTG
EST: gi|207764082|gb|GD738905.1|GD738905
EST:     CCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAA                         ATCCTGGAGATGGACCAATTGTGTTAGTTTTTGGCTCCAACTCGTGAACTT
genomic: CCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaaggaaat ... atattttcagATCCTGGAGATGGACCAATTGTGTTAG-TTTTGGCTCCAACTCGTGAACTT
EST: gi|209699629|gb|BW655721.1|BW655721
EST:     TGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAA                         ATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTG
genomic: TGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaaggaaat ... atattttcagATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTG
EST: gi|10709520|gb|BF009244.1|BF009244
EST:     GCTTACTTTGT-GCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAA                         ATCCTGGAGATGGACCAATTGTG
genomic: GCTTACTT-GTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaaggaaat ... atattttcagATCCTGGAGATGGACCAATTGTG
EST: gi|209720525|gb|BW675024.1|BW675024
EST:     TGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAA                         ATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCNTC-AACTCGTGAACTT
genomic: TGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAgtaaggaaat ... atattttcagATCCTGGAGATGGACCAATTGTGTTAGTTTTGGC-TCCAACTCGTGAACTT