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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttggttgtatttgctatctggatttaaaacctgatgcgtctttactgatcatgctctgtgtttattcctctgtatgccttttacag

Basic information

species Glycine max
transcript GLYMA07G01000.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01000.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G431350_T01 (Zea mays), 5'ss of exon 3
AAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttggttgtatttgctatctggatttaaaacctgatgcgtctttactgatcatgct-ctgtgtttattc---ctctgtatgcct---tttacag---------------
|||||||||| |||||||| ||||| || ||||| || |||||||| ||| |||||||||||||||| || |||| |||||| |||   |  ||  | | ||  ||||   | ||||     | |   |||  ||||   ||  |  ||      |||| |  |||||| || |    | | ||||  |   ||| ||                
AAGACCTGCACTTTTTTGTTACTGGAGGAGAAGAAGAGAATGAGCTTATTTTAGCATCAGTTCTTCAGGGATTCTCTGATGCTGTCGAACGACTTCTCAAgttattttccctctattaaac-tttatctttgcaacc-actgttttgttctgttacatgttgttgtgttaatgctgattgtatatgaatgtgtttccaatcttggtggtttcag

upper sequence: GLYMA07G01000.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G883149_T03 (Zea mays), 5'ss of exon 3
AAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttggttgtatttgctatctggatttaaaacctgatgcgtct--ttactgatcatgctct--gtgtttatt-cctctgtatgccttttacag--------------
|||||||||| |||||||| ||||| || ||||| || |||||||| ||| |||||||||||||||| || |||| |||||| |||   |  ||  | | ||  | ||   | ||||     |     ||| || | |  |  ||    ||||   | ||  | |   || | |||   | || |||  |||   |               
AAGACCTGCACTTTTTTGTTACTGGAGGAGAAGAGGAGAATGAGCTTATTTTAGCATCAGTTCTTCAGGGATTCTCTGATGCTGTCGAACGACTTCTCAAgttatcttccctctattgaagtttatcttttcaaccattgtttgttctgttacatgttattgtgttaatgctgattgtatatgaatgtgtttccaaccttggtggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724704|gb|AW309037.1|AW309037
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAG                         GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttgg ... ccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTT
EST: gi|38192954|gb|CF922160.1|CF922160
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAG                         GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACGTGGATCTCATTCTCTT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttgg ... ccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTT
EST: gi|13312601|gb|BG406252.1|BG406252
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAG                         GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTC
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttgg ... ccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTC