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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattgcttgctcatttttgaaagatttctttctttccctgttttccttatctgtattggctattgtgaatgtgtgtcag

Basic information

species Glycine max
transcript GLYMA07G00490.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827362|gb|BE211092.1|BE211092
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|298188098|gb|HO032055.1|HO032055
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|213614987|gb|DB957039.1|DB957039
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|298164323|gb|HO013968.1|HO013968
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|213592873|gb|DB969839.1|DB969839
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|298167381|gb|HO012644.1|HO012644
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|27427422|gb|CA938942.1|CA938942
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|193614977|gb|FK563785.1|FK563785
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|23727295|gb|BU761676.1|BU761676
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|13125598|gb|BG316168.1|BG316168
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTTCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|298172529|gb|HO019569.1|HO019569
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|33387852|gb|CA851059.1|CA851059
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|15200810|gb|BI424534.1|BI424534
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|15338030|gb|BI498686.1|BI498686
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
EST: gi|298164600|gb|HO014245.1|HO014245
EST:     AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAG                         CCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattg ... tgtgtgtcagCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGgtatgtattgcttgctcatttttgaaagatttctttctttccctgttttccttatctgtattggctattgtgaatgtgtgtcag

- - - - - - - -  TGCTGC
- - - - - - - - -  CTGCAG
- - - - - - - - - -  GCAGCT