1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAGgtataattattcaatcttaagatacatttgcttaatcaaacataatatagagaaacaaaatgtcaaatttcttgtatcttttaaacttgttgtacttgtttaaccatgaagtttataatctattcattgcaacaataaataattaatattagcccttttgtgctttcatttaattaaag
species | Glycine max |
transcript | GLYMA07G00330.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCAGAAGAACATCGCANAGAAATTCTTCGTTACACATATTATCACCAG AATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTEST: gi|209727472|gb|BW663733.1|BW663733
genomic: TTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAGgtataattat ... ttaattaaagAATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTT
EST: TTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAG AATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTEST: gi|33390028|gb|CA853235.1|CA853235
genomic: TTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAGgtataattat ... ttaattaaagAATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTT
EST: TTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAG AATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTEST: gi|33388879|gb|CA852086.1|CA852086
genomic: TTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAGgtataattat ... ttaattaaagAATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTT
EST: TCCAGAAGAACATCGCAAAGAAAATTCTTCGTTACACATATTATCACCAG AATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTEST: gi|209707634|gb|BW683427.1|BW683427
genomic: TCCAGAAGAACATCGCAAAGAAA-TTCTTCGTTACACATATTATCACCAGgtataattat ... ttaattaaagAATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTT
EST: TTCCAGAAGAACATCGCANAGAAATTCTTCGTTACACATATTATCACCAG AATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTEST: gi|209724227|gb|BW666592.1|BW666592
genomic: TTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAGgtataattat ... ttaattaaagAATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTT
EST: CCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCANNG A-TGA-GACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTT
genomic: CCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCA--Ggtataattat ... ttaattaaagAATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAGgtataattattcaatcttaagatacatttgcttaatcaaacataatatagagaaacaaaatgtcaaatttcttgtatcttttaaacttgttgtacttgtttaaccatgaagtttataatctattcattgcaacaataaataattaatattagcccttttgtgctttcatttaattaaag
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA