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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAAAAGGCAGGAAGAAATAAGCAGTTGTGTCGAAAATTGCAGCATTCCTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAGgtaacccataattctgtcatcatattctcagtttcatcatctgttctttctaatttaaatttttaagtgtgtataaaattattaaggtgagtcttatgaa...

Basic information

species Glycine max
transcript GLYMA06G47800.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164806|gb|HO010803.1|HO010803
EST:     CTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAG                         GAGAGGTTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCGGCT
genomic: CTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAGgtaacccata ... cttggtgcagGAGAGGTTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCGGCT
EST: gi|151406813|gb|EV276628.1|EV276628
EST:     CTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAG                         GAGAGGTTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCGGCT
genomic: CTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAGgtaacccata ... cttggtgcagGAGAGGTTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCGGCT
EST: gi|298176121|gb|HO015526.1|HO015526
EST:     CTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAG                         GAGAGGTTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCGGCT
genomic: CTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAGgtaacccata ... cttggtgcagGAGAGGTTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCGGCT
EST: gi|192298211|gb|FG991701.1|FG991701
EST:     CTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAG                         GAGAGGTTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCGGCT
genomic: CTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAGgtaacccata ... cttggtgcagGAGAGGTTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCAAAAGGCAGGAAGAAATAAGCAGTTGTGTCGAAAATTGCAGCATTCCTCTTTCTAATGTGCAACATACATTTGATCATGAGATGGCACAGTTTCAGgtaacccataattctgtcatcatattctcagtttcatcatctgttctttctaatttaaatttttaagtgtgtataaaattattaaggtgagtcttatgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG