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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACTTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTTTTATGCCGgtaaaatcaagataattccaatagaaaaagttaattttttaagggttttttgttttatttatctctaaaggattggattatgtggaaag

Basic information

species Glycine max
transcript GLYMA06G46740.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453389|gb|BM954799.1|BM954799
EST:     ATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTTTTATGCCG                         GATGGAGAAGATCAACATGAAGAANGTGAGATGCCAAGCCAAGGTGGTGGG
genomic: ATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTTTTATGCCGgtaaaatcaa ... atgtggaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGG
EST: gi|209710126|gb|BW681066.1|BW681066
EST:     GAGCAACGTGCTTCCTGCCATGNNACTTT-GT-ATGGCAGTTTTATGCCG                         GATGGAGAAG-TCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGG
genomic: GAGCAACGTGCTTCCTGCCATG--ACTTTTGTTATGGCAGTTTTATGCCGgtaaaatcaa ... atgtggaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGG