1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGTGATGCTGCTCCAGATGTAATTGAGTACAGACATGGCCTCACTCCACCCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATgtatagttttcattcacataacatacacattaacatgcctctctgcctaatatatatatatatatatatatatatatatatatatatatatatatatatatatatgctctcataaatacttttttttattctttttcccatttttcag
species | Glycine max |
transcript | GLYMA06G46640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAAT CCTGAGCTTGTCTCCCGEST: gi|192299072|gb|FG992848.1|FG992848
genomic: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATgtatagtttt ... catttttcagCCTGAGCTTGTCTCCCG
EST: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAAT CCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTGGAEST: gi|298172884|gb|HO019868.1|HO019868
genomic: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATgtatagtttt ... catttttcagCCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTGGA
EST: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAAT CCTGAGCTTGTCTCCCGTGTTGAGAAAGATCGTCTCAAAATCATGGCTGGAEST: gi|6072102|gb|AW101421.1|AW101421
genomic: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATgtatagtttt ... catttttcagCCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTGGA
EST: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAAT CCTGAGCTTGTCEST: gi|298176866|gb|HO026873.1|HO026873
genomic: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATgtatagtttt ... catttttcagCCTGAGCTTGTC
EST: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAAT CCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTGGA
genomic: CCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATgtatagtttt ... catttttcagCCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGATGCTGCTCCAGATGTAATTGAGTACAGACATGGCCTCACTCCACCCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATgtatagttttcattcacataacatacacattaacatgcctctctgcctaatatatatatatatatatatatatatatatatatatatatatatatatatatatatgctctcataaatacttttttttattctttttcccatttttcag
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