1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCATTGCTGTTGTTTTTGCATGGAATAATTTATGGCTACAGAAGCTCTCTGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATGgtacaaaccttgttgcctaattgatatttatcataatatgttgatgcatatttcatatttcatatggttgatagactttctgtctaatttgtttgtgcag
species | Glycine max |
transcript | GLYMA06G44390.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGCTTCCAGAAAAATACAGAAGAGATGGTCTTCCAACGCTACTTTATG GATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTGEST: gi|209720745|gb|BW657747.1|BW657747
genomic: TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATGgtacaaacct ... gtttgtgcagGATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
EST: TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATG GATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTGEST: gi|19054064|gb|BM732731.1|BM732731
genomic: TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATGgtacaaacct ... gtttgtgcagGATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
EST: TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATG GATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
genomic: TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATGgtacaaacct ... gtttgtgcagGATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATTGCTGTTGTTTTTGCATGGAATAATTTATGGCTACAGAAGCTCTCTGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATGgtacaaaccttgttgcctaattgatatttatcataatatgttgatgcatatttcatatttcatatggttgatagactttctgtctaatttgtttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG