1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAAACTATCGAAAGAGCTCATATGCCGAAAGATTTGTGGGAAAGAGTAAAGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtggatctacgttgtcttttgacatgtttatgtattcaatgttttacatgttagtgattatcaagatcagttgtgtgcttgaccattctgcattggcag
species | Glycine max |
transcript | GLYMA06G43930.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|193623854|gb|FK575582.1|FK575582
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|193675302|gb|FK618658.1|FK618658
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTTGACCAAEST: gi|193636957|gb|FK578982.1|FK578982
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTT-GACCAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTACTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|254345742|gb|GR859389.1|GR859389
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|21889376|gb|BQ742589.1|BQ742589
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|18690832|gb|BM519680.1|BM519680
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|208070582|gb|GD867563.1|GD867563
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|6502229|gb|AW203602.1|AW203602
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|208163411|gb|GD959789.1|GD959789
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTAGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACACATG TTGTATTGGCCCAAAEST: gi|193639236|gb|FK586457.1|FK586457
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAAEST: gi|193488212|gb|FK457953.1|FK457953
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTGGCCCAAAEST: gi|208050265|gb|GD845488.1|GD845488
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATTGGCCCAAA
EST: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATG TTGTATTTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAA
genomic: AGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtgga ... gcattggcagTTGTATT-GGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAACTATCGAAAGAGCTCATATGCCGAAAGATTTGTGGGAAAGAGTAAAGTTGCCAAGGAATTATGAGAAGGCACTTGAAATCATAGACAAACATATGgtactgtggatctacgttgtcttttgacatgtttatgtattcaatgttttacatgttagtgattatcaagatcagttgtgtgcttgaccattctgcattggcag
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