1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AATTGAAACAGTCACTACTTATGATTCAAACACCGGAGAATTTGTCATCAATACCCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCGGCAAATgtaatgatttttttgtatacttgataattgtttaaaatcctagacatgataacatttttcaactgctccaactttgtatatattaaccttatattaacttgttcttttattcag
species | Glycine max |
transcript | GLYMA06G43840.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATACCCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCGGCAAAT CATGCAACCCACACTATAGTCTTTTCACAGCTCTATATAAATGGAAGCAATEST: gi|33390491|gb|CA853686.1|CA853686
genomic: ATACCCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCGGCAAATgtaatgattt ... ttttattcagCATGCAACCCACACTATAGTCTTTTCACAGCTCTATATAAATGGAAGCAAT
EST: GGTGGTGCAGCAAAT CATGCAACGCACACTATAGTCTTTTCACAGCTCTATATAAATGGAAGCAATEST: gi|192331590|gb|FK023437.1|FK023437
genomic: GGTGGTGCGGCAAATgtaatgattt ... ttttattcagCATGCAACCCACACTATAGTCTTTTCACAGCTCTATATAAATGGAAGCAAT
EST: ATACCCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCGGCAAAT CATGCAACCCACACTATAGTCTTTTCACAGCTCTATATAAATGGAAGCAAT
genomic: ATACCCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCGGCAAATgtaatgattt ... ttttattcagCATGCAACCCACACTATAGTCTTTTCACAGCTCTATATAAATGGAAGCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGAAACAGTCACTACTTATGATTCAAACACCGGAGAATTTGTCATCAATACCCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCGGCAAATgtaatgatttttttgtatacttgataattgtttaaaatcctagacatgataacatttttcaactgctccaactttgtatatattaaccttatattaacttgttcttttattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG