Sequence
atgc intronic sequence ATGC exonic sequenceGATAAGGAATTGTTTGACACAGTTGTATGCTAAAGACATAACACCGGACGATAAACAGGAGCTTGATGAGGCTTTACAAAGAGAGgtaactaactgctgattgttcttgattccatatacttgtatttgtataatgccattaatgataaccacatggttcttggagttttatgcaactttgccta...
Basic information
species | Glycine max |
transcript | GLYMA06G43050.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G43050.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 3
GATAAGGAATTGTTTGACACAGTTGTATGCTAAAGACATAACACCGGACGATAAACAGGAGCTTGATGAGGCTTTACAAAGAGAGgtaa----------ctaactgctgatt-------gttcttgattccatat----acttgtatttgtataat--gccattaatgataaccacatggttcttggagttttatgca-actttgccta--------------------------------------------------------------------
|||||||||||||||| || | || | || || || ||||| || |||||||||||||||||||||||| | || || ||||||| ||| |||| | |||||||| | | | |||||| || | | ||| || || | | | ||| || | |||| | ||||
GATAAGGAATTGTTTGGTTCAACTATACTCAAAGGATATCACACCAGATGATAAACAGGAGCTTGATGAGGCTCTCCAGAGGGAGgtaagataatcaagttaatcactgactcatttatagtcttgattttttttttcaaattgtatgtgccttttcgattatttatagaaattataaattactttcagcatgatgctcaacatgccagattttgtgctccaactaaatttattaatgcattaataaggtgaatcagaacatgttcttatttttcag
upper sequence: GLYMA06G43050.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G473001_T01 (Zea mays), 5'ss of exon 3
GATAAGGAATTGTTTGACACAGTTGTATGCTAAAGACATAACACCGGACGATAAACAGGAGCTTGATGAGGCTTTACAAAGAGAGgtaactaactgctgattgttcttgattccatatacttgtatttgtataatgccattaatgataaccacatggttcttggagttttatgcaactttgccta-------
|||| | || |||||| || | || | ||||| || || ||||| ||||| ||||| |||||||||||| | |||||||||||| || | | | | || | || | | | | | | | ||| | ||| ||||| || || | ||
GATACGCAACTGTTTGGTTCAACTCTACTCAAAAGATATCACTCCGGATGATAAGCAGGAACTTGATGAGGCTCTGCAAAGAGAGgta-cttctttcaatctaattttattacctaaaattctttgaagcttgagaccaaagagattaattcttaatttcttacctgaatacctctctctttctttttcaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26045705|gb|CA783206.1|CA783206EST: ACATAACACCAGACGATAAACAGGAGCTTGATGAGGCTTTACAAAGAGAG ATTCAAGCTGCATTTCGTACGGATGAAATTCGAAGGACCCCTCCTACACCA
genomic: ACATAACACCGGACGATAAACAGGAGCTTGATGAGGCTTTACAAAGAGAGgtaactaact ... tctcatgcagATTCAAGCTGCATTTCGTACGGATGAAATTCGAAGGACCCCTCCTACACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATAAGGAATTGTTTGACACAGTTGTATGCTAAAGACATAACACCGGACGATAAACAGGAGCTTGATGAGGCTTTACAAAGAGAGgtaactaactgctgattgttcttgattccatatacttgtatttgtataatgccattaatgataaccacatggttcttggagttttatgcaactttgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA