1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatgaacaatcaccaaggtgacaactattccttttaagctttctctgctgtcaagtatctcattgttttccaccactggatgacatttctcttttacctaaaacatag
species | Glycine max |
transcript | GLYMA06G42840.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGGCAGAACGTGTTGTCGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAEST: gi|120530050|gb|EH258184.1|EH258184
genomic: ATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
EST: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAEST: gi|37996099|gb|CF807688.1|CF807688
genomic: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
EST: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAEST: gi|193416669|gb|FK384125.1|FK384125
genomic: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
EST: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAEST: gi|120531619|gb|EH259752.1|EH259752
genomic: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
EST: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAEST: gi|5058337|gb|AI736813.1|AI736813
genomic: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
EST: ACATGGCACAACGTGATGATGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAEST: gi|208268482|gb|GE069393.1|GE069393
genomic: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
EST: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTEST: gi|193433005|gb|FK395713.1|FK395713
genomic: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTT
EST: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAEST: gi|42723166|gb|CK769065.1|CK769065
genomic: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
EST: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAG GCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
genomic: ACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatga ... taaaacatagGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatgaacaatcaccaaggtgacaactattccttttaagctttctctgctgtcaagtatctcattgttttccaccactggatgacatttctcttttacctaaaacatag
- - - - - - - - - - - - - - - - - - - - - TTGGAG