1 5' 3' | 2 5' 3' | 3 5' 3' |
TGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTCTGGCCAATGAGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGgtatatataatttctctatttgatttatcttagaagaaaatgggccttttcattttactattttatgggaatctccattcaaaaaagctttcctgagttt...
species | Glycine max |
transcript | GLYMA06G42820.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAG GATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGGEST: gi|58022011|gb|CX708752.1|CX708752
genomic: AGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGgtatatataa ... gtgtttgcagGATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGG
EST: AGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAG GATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGGEST: gi|193482061|gb|FK445654.1|FK445654
genomic: AGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGgtatatataa ... gtgtttgcagGATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGG
EST: AGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAG GATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGGEST: gi|193570007|gb|FK525750.1|FK525750
genomic: AGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGgtatatataa ... gtgtttgcagGATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGG
EST: AGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAG GATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGG
genomic: AGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGgtatatataa ... gtgtttgcagGATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTCTGGCCAATGAGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGgtatatataatttctctatttgatttatcttagaagaaaatgggccttttcattttactattttatgggaatctccattcaaaaaagctttcctgagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaaa