1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGTCCTGTTTATAAAGCTCAGATGTCTACCGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAGgtaggttgccaatgtcattttccgttactttggccactccactgatagaattatgctgtgtttcatgacataaatttcagggccaagcgtttttagattt...
species | Glycine max |
transcript | GLYMA06G41510.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAG GTCATGTTGTTGGGGAAGGTTACACCATAGAAATCTGTTGAAATTTGGTTGEST: gi|192326286|gb|FK017633.1|FK017633
genomic: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAGgtaggttgcc ... tttttttcagGTCATGTTGTTGGG-AAGGTTACACCATAGAAATCTGGTGAA-TTTGGTTG
EST: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAG GTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGA
genomic: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAGgtaggttgcc ... tttttttcagGTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCCTGTTTATAAAGCTCAGATGTCTACCGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAGgtaggttgccaatgtcattttccgttactttggccactccactgatagaattatgctgtgtttcatgacataaatttcagggccaagcgtttttagattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactcc