Sequence
atgc intronic sequence ATGC exonic sequenceAGAGGATGAAATTGAGGACATTCAGAAGgtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccag
Basic information
species | Glycine max |
transcript | GLYMA06G36130.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 4
AGAGGATGAAATTGAGGACATTCAGAAGgtatacat-agaatcttacaggttatgactactttaaatatttatcttttac-caaatgtttaatgctttttcttctattatttttttttcccag
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AGAAGATGAAATTGAGGACATTCAGAAGgtattttccagagtctt---gatca--attaccagtaa-atgaatctaccacacaaatgatta--ggttgcttatctaaattctttttcttccag
upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 3
lower sequence: PP1S59_173V6.2 (Physcomitrella patens), 5'ss of exon 1
---------------------------AGAGGATGAAATTGAGGACATTCAGAAGgtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttt--tttttcccag-----------------------------------------------------------------------------------------------------------
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GTGGTGCGCAATTTTCCTTGTTATCAGAGAGGATGAAGTTGAGGACATTCAGAAGgtaggtttg---tttggtttttctttattaatgtaaataat--tttaatattaaatttcttattctagctccagtctaaatttggtactgccctgatggatagatgtcttcaagatgtttgttcctcattagatcttaagtgctctatggttacaaggactttacggagacagctgattggttctttatctttgtttctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213611344|gb|DB972745.1|DB972745EST: AGAGGATGAAATTGAGGACATTCAGAAG GAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTAT
genomic: AGAGGATGAAATTGAGGACATTCAGAAGgtatacatag ... tttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGGATGAAATTGAGGACATTCAGAAGgtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccag
GAGGAT
- AGGATG