Sequence
atgc intronic sequence ATGC exonic sequenceGATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGgtgaatatcaaaagggcttttgtttaatagaatttctttttattctttttttgctagtgttttttcttgagttcatatcaaaagcaatatattaaattgt...
Basic information
species | Glycine max |
transcript | GLYMA06G33380.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 3
GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGgtgaa--tatcaaaagggcttttgtttaatagaatttctttttattctttttttgctagtgttttttcttgagttcatat-caaaagcaatatattaaattgt-----------------------------------------------------------------------------------------
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GATAAGGAATTGTTTGGTTCAACTATACTCAAAGGATATCACACCAGATGATAAACAGGAGCTTGATGAGGCTCTCCAGAGGGAGgtaagataatcaagttaatcactgactcatttatagtcttgattttttttttcaaattgtatgtgccttttcgattatttatagaaattataaattactttcagcatgatgctcaacatgccagattttgtgctccaactaaatttattaatgcattaataaggtgaatcagaacatgttcttatttttcag
upper sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G473001_T01 (Zea mays), 5'ss of exon 3
GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGgtgaatatcaaaagggcttttgtttaatagaatttctttttattctttttttgctagtgttttttcttgagttcatatc--aaaagcaatatattaaattgt----
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GATACGCAACTGTTTGGTTCAACTCTACTCAAAAGATATCACTCCGGATGATAAGCAGGAACTTGATGAGGCTCTGCAAAGAGAGgtacttctttcaatctaattttattacctaaaattctttgaagcttgagaccaaagagattaattcttaatttcttacctgaatacctctctctttctttttcaag
upper sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGgtgaatatcaaaagggcttttgttta-atagaatttctttttattctttttttgctagtgttttttcttgagttcatatcaaaagcaatatattaaattgt-
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GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggttcagttct--ctgttacatgagcctgcagtcatgcagatcatttctcttgaaactgccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5677022|gb|AI938152.1|AI938152EST: ACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAG ATCCAAGCTGCATTTCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCA
genomic: ACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGgtgaatatca ... gttcatgtagATCCAAGCTGCATTTCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGgtgaatatcaaaagggcttttgtttaatagaatttctttttattctttttttgctagtgttttttcttgagttcatatcaaaagcaatatattaaattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagcaa