Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttattgtcccttaatttattgtataatttattccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcag

Basic information

species Glycine max
transcript GLYMA06G32680.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 2
TATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttattgtcccttaatttattgtataatttattccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcag
| |  ||||| || || ||||| || ||  | ||||| || || || ||||||||||| ||||| ||||| ||||||||||||||||| || ||||| |||||||  |        ||||| ||  | |||  |  ||||    |  ||  |    | |  |  ||| |  |||                                                       
TTTTCTTTGCTGGCATCATTGTTATCTGCCTTGATGAACTTCTCCAGAAAGGCTATGGTTTGGGTTCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcat--------cttaaatttctttatcttacattct--tactgatgtgacattttgttacaatt--tag-------------------------------------------------------

upper sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G073498_T02 (Zea mays), 5'ss of exon 2
TATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttattgtcccttaatttattgtataatttattccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcag
| |  ||||| || || ||||| || ||| ||||||| || || || ||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||||  |  | | |  |||||   ||   | || |  |      | |  |||    || |||  ||  |||     | ||||                                              
TTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatcttggac--ttaatccttttattgatgtgctgttctgttgcacttaaagcttataataagaattctttca-tgtag---------------------------------------------

upper sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
TATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttattgtcccttaatttattgtataattta-ttccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcag
| |  ||||| ||||| ||||| || ||| | ||||| ||||| || ||||||||||| ||||||||||| || |||||||||||||| || ||||| |||||||  |  |     | |  ||  ||   ||  | | || |  ||    || |   | |  |  | |   ||||     | |    |      ||  || |||                          
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacctcagttgccacactttgcctaacttttctgcctaaggttagt----tattcaattcgaactactaacctt--------------------------

upper sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G130987_T02 (Zea mays), 5'ss of exon 3
TATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttattgtcccttaatttattgtataatttattccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcag
| |  ||||| || || ||||| || ||||||||||| || || || ||||| ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||  |  |||    | |   | || |  |  ||  |     || ||  |  |||    |  ||  || |   | | |       |||| ||  |                                
TTTTCTTTGCTGGCATCATTGTCATCTGTTTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcat-gttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtag-------------------------------

upper sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S323_56V6.1 (Physcomitrella patens), 5'ss of exon 3
TATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttattgtcccttaatttattgtataatttattccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcag
| |  || || || || ||||| || ||| | |||||| | || || || || |||||  ||||||| ||||||||||| ||||||||||| ||||| ||||| | |   || ||  |     |    |        |   || |  ||  ||| |   ||    |    |  ||   | | || |   | |  |    |  | ||||                     
TCTTCTTCGCTGGAATCATTGTTATCTGTCTTGATGAGTTGCTACAGAAGGGTTATGGACTGGGATCCGGAATTTCTCTTTTCATTGCCACCAATATCTGgtaggctcagttttctttatgcctgcaat--------tcttagaaatgaagttgagagccaatatactcgtctgctt-gcgaattgaaatctggagtttatctctatgt--------------------

upper sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S114_48V6.1 (Physcomitrella patens), 5'ss of exon 3
TATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttattgtcccttaatttattgtataatttattccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcag
| |  || || || |||||||| || ||| |||||||| |  | || || || |||||  | || || ||||||||||||||||| ||||| ||||| ||||||| | |        || || ||||  | ||        ||  ||  |      |   ||| |||    |   |   |||  | | |  | || |||      |||||| ||  |  |||       
TGTTCTTCGCCGGAATTATTGTTATCTGTCTGGATGAGTTGTTACAGAAGGGTTATGGGCTTGGGTCAGGAATTTCTCTGTTCATCGCCACGAATATCTGgtaagctat-------ttttatatattcgaaaa--------aggttcacgtacaaataggataacaaactctgctaggttgtg-gatttaatgtacaaag-----atgaatgctacg--tact------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254327676|gb|GR834641.1|GR834641
EST:     GGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATG                         TGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGT
genomic: GGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagtttta ... tacattgcagTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGT
EST: gi|208186487|gb|GD983056.1|GD983056
EST:     GGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATG                         TGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACG
genomic: GGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagtttta ... tacattgcagTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACG
EST: gi|17519461|gb|BM188503.1|BM188503
EST:     GGATATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATG                         TGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACG
genomic: GGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagtttta ... tacattgcagTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACG