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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAGGGGTGAACTTGTGATGGACCCAAAGAAGATTGCAAGGAGATATATAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAGgtgtgttgttctagtgtggcattgtttgatcttttacattgttgattttgatttgtgcaataaaaatggagatgaagttaattgagaaaaatatttagct...

Basic information

species Glycine max
transcript GLYMA06G30030.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G30030.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0065g00860.t01 (Vitis vinifera), 5'ss of exon 2
TGGCAGGGGTGAACTTGTGATGGACCCAAAGAAGATTGCAAGGAGATATATAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAGgtgtgttgttctagtgtggcattgtttgatcttttacattgttgattttgatttgtgca---ataaaaatggagatgaagttaattgagaa--aaatatttagct
||| |||||||||||||||||||| || ||||| || ||   ||| ||||| || ||||||||||||||||||||  |||| ||| | ||||| ||||||||   |  || |   ||  ||   ||  |  |||   | | |   |||| |  |||  |   ||     ||   |||    |   | | ||   || ||  ||  
TGGGAGGGGTGAACTTGTGATGGATCCCAAGAAAATCGCCCAGAGGTATATTAGGTCTGATTTCTTCATTGATTTGGTTGCAACATTGCCTCTCCCTCAGgta-atcattttgaagtatcaaatttcca--tttggaagtatcatttttcaactgtttacacattgctctgtgtatgtgtgtgtgttataattgaaaatacag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193453724|gb|FK416784.1|FK416784
EST:     TAAGATCTGATTTCTTCATTGATTTTACTGCAACACTCCCTCTACCTCAG                         ATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCAC
genomic: TAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAGgtgtgttgtt ... tctgtttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCAC
EST: gi|209716845|gb|BW665483.1|BW665483
EST:     TAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAG                         ATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCA
genomic: TAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAGgtgtgttgtt ... tctgtttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCA