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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAGTATTACCTTGCATCTGCATGTGAAGAGATATACGCCCCACCCAGTGCCTACTTTTCTTTATTTGGATTGACTGTTCAAGCCTCATTCCTCAGAGgtatagattattctaattttcttttccttgcatttttacaaatttgacttatagtgattgtccttgatttttttttgtttccttacagcatgtcctacat...

Basic information

species Glycine max
transcript GLYMA06G22870.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G22870.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g04680.t01 (Vitis vinifera), 5'ss of exon 3
AAAGAGTATTACCTTGCATCTGCATGTGAAGAGATATACGCCCCACCCAGTGCCTACTTTTCTTTATTTGGATTGACTGTTCAAGCCTCATTCCTCAGAGgtatagattattctaattttcttttccttgcatttttacaaatttgacttatagtgattgtccttgatttttttt----tgtttccttacagcatgtcctacat
||||| ||||||||||  ||||| ||||| ||| |||| || || || ||||| || |||||||||| |||  ||||||||||||| || || ||  |||||| || |  | ||        || |  ||  ||   | |||||  | | |  |  ||| |  | |  |          || |   |   || |     |   |
AAAGAATATTACCTTGGTTCTGCTTGTGATGAGCTATATGCACCCCCAAGTGCATATTTTTCTTTATATGGTCTGACTGTTCAAGCATCCTTTCTTGGAGgta-agttagtgctggcacgggttacactgt-ttcacataaattgcagtca--gcaattatgttgggatcacaacaaaatgctgtttctgagaaatgattgtgt