1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTCAGCCCCAGAAATTCGTGATGTGTTTGGTGATTTTGATGATGATGAAGAGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAATgtgagtttctggttctggtgccaatagtgacatttttcattttatctttatctttgaattgcccaaaattttaagaattaatgattcaagtgatttcatgcctcag
species | Glycine max |
transcript | GLYMA06G21900.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAAT AGATACC-TATGGAGGAGGAAGGGAAGTTAAACGGAAAGAATCTGAEST: gi|193347293|gb|FK313067.1|FK313067
genomic: AGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAATgtgagtttct ... catgcctcagAGATACCCTATGGAGGAGGAAGGGA-GTTA--CGGAAAGAATCTGA
EST: AGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAAT AGATACCCTATGGAGGAGGAAGGGAGTTACGGAAAGAATCTGAGACCTGAAEST: gi|298181196|gb|HO022635.1|HO022635
genomic: AGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAATgtgagtttct ... catgcctcagAGATACCCTATGGAGGAGGAAGGGAGTTACGGAAAGAATCTGAGACCTGAA
EST: AGGAGGAAATGGGGTATGCAGTCCAGCAGGACATTGAACAAGATTCGAAT AGATACCCTATGGAGGAGGAAGGGAG
genomic: AGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAATgtgagtttct ... catgcctcagAGATACCCTATGGAGGAGGAAGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGCCCCAGAAATTCGTGATGTGTTTGGTGATTTTGATGATGATGAAGAGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAATgtgagtttctggttctggtgccaatagtgacatttttcattttatctttatctttgaattgcccaaaattttaagaattaatgattcaagtgatttcatgcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA