1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCTACATAGGAATGACAAAGAGAGTGAGGAATTATCTTTGATTCGTGCTCAATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAGgtttgttccatatgctgaaaaacactttatcccggtcaaagtttgtaaatctgtttagctcaacttaagtttgcaatatttttggaaagaatgcttactg...
species | Glycine max |
transcript | GLYMA06G19940.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCAAA-TGAGAAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAG AAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTGEST: gi|7283430|gb|AW596038.1|AW596038
genomic: TTCAAATTGAG-AAGCAGCAGTCTAGTCTGCTTGATCTTGTACAGgtttgttcca ... ttttttacagAAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTG
EST: AATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAG AAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTGEST: gi|13477635|gb|BG507437.1|BG507437
genomic: AATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAGgtttgttcca ... ttttttacagAAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTG
EST: AATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAG AAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTGEST: gi|192328733|gb|FK022533.1|FK022533
genomic: AATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAGgtttgttcca ... ttttttacagAAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTG
EST: AATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAG AAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTGEST: gi|193476308|gb|FK443425.1|FK443425
genomic: AATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAGgtttgttcca ... ttttttacagAAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTG
EST: GATCTTGTACAG AAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTG
genomic: GATCTTGTACAGgtttgttcca ... ttttttacagAAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACATAGGAATGACAAAGAGAGTGAGGAATTATCTTTGATTCGTGCTCAATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAGgtttgttccatatgctgaaaaacactttatcccggtcaaagtttgtaaatctgtttagctcaacttaagtttgcaatatttttggaaagaatgcttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC