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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGGATAGACATGTTGCGATTGGTTTTGCGCTTGATATTGCTCGGGCAATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataatttggtttgctttctttcaaatgaagaatcgaaagtcagatccggtagatgttggcttgtatgtattgtagtttacactaatctgcattcccc...

Basic information

species Glycine max
transcript GLYMA06G18730.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18730.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g38080.1 (Oryza sativa), 5'ss of exon 4
TGCTTGGATAGACATGTTGCGATTGGTTTTGCGCTTGATATTGCTCGGGCAATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataatttggtttgctttctttcaaatgaagaatcgaaagtcagatccggtagatgttggcttgtatgtattgtagtt-tacactaatctgcattcccc---
 || ||||    | ||| ||  |||| |||||| | ||||||||||| || ||||| ||  ||||| | || | |||||| || |||||||||||||||||||| | |    ||||    | |     ||    || |  | | | ||  ||| ||| |  ||      | ||  ||  | | || || |    || | ||   
AGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGgtaagattgctatttggaaacct--ggttgcttcatgggcatttacat--ggtggatttctgcaatccggaataataactattcattagttcatatacaccatg

upper sequence: GLYMA06G18730.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G50180.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCTTGGATAGACATGTTGCGATTGGTTTTGCGCTTGATATTGCTCGGGCAATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataatttggtttgctttctttcaaatgaagaatcgaaag-tcagatccg-gtagatgttggcttgtatgtattgtagtttacactaatctgcattcccc
|| ||||| |  | ||| || || ||||||||||||||||||||||| |  ||||| ||| ||||||| ||||||||||| ||||||||||| ||||| ||||| |   |   |   |     | | ||| |  ||  || | || | |    |||  ||          ||  |  | |    |||        ||  |  
TGTTTGGAGACTCGTGTGGCTATCGGTTTTGCGCTTGATATTGCTCGTGGTATGGAATGCTTGCATTCCCATGGGATCATTCACCGTGATCTCAAACCCGgtaaaa--ctacctctttaaacctgatatgtatcatttaatgatctgcttaaagtatttgcaaaacaccttgcttcatggaaaccacatgctcagatctcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18720447|gb|BM523256.1|BM523256
EST:     TGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTG                         ATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTG
genomic: TGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataattt ... ctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTG
EST: gi|6566830|gb|AW234462.1|AW234462
EST:     AATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTG                         ATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTG
genomic: AATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataattt ... ctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTG
EST: gi|193600029|gb|FK549766.1|FK549766
EST:     AATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTG                         ATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAA
genomic: AATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataattt ... ctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAA