Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCCGTCTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGGCTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgtttaaattttttatttcctatttgcttgatgtcatttgatttgaaaattatgtatgtgatgtatctgaacttagttccattttattgttttgcag

Basic information

species Glycine max
transcript GLYMA06G18400.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18400.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g18860.1 (Oryza sativa), 5'ss of exon 3
TTTACCCCGTCTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGGCTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgtttaaattttttatttcctatttgcttgatgtcatttgatttgaaaattatgtatgtgatgtatctgaacttagttccattttattgttttgcag-----------------
 || |  || ||  | ||||||||  | |||||||||||||| |||||  ||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||    |  || |||  |   || ||||| |   ||||| |   | || | |   || ||    |     || |  || |  | | |    | |                 
ATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGgtttgttatccttttttattccatg-ttgatttagcttgatctattatttct-tgcatgctgcccttttctatattaacactcaactttccctcggtatccattgacttccag

upper sequence: GLYMA06G18400.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G039214_T01 (Zea mays), 5'ss of exon 3
TTTACCCCGTCTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGGCTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgtttaaattttttatttcctatttgcttgatgtcat-ttgatttgaaaa-ttatgtatgtgatgtatctgaacttagttccattttattgttttgcag------
|||| | |  ||  | |||||||| || || ||||||||| | |||||||||||||| ||||| |||||||| || ||||| ||||||||||| || |||||||    |  | || |  || ||||   ||   || |||| ||      || | ||| | | ||  ||||  ||  |   |||     |   ||||       
TTTATCTCAGCTGCGAGCTGTTGTCCTGCATAGTCCTATATTGTCAGGGCTGAGAGTTATGTATCCTGTGAAGCGCACATATTGGTTTGACATCTACAAGgtttg---tcgtcatctgttaattgcggcattcaatattgagttatccgcttctatatctcaggtgcctgattttt-tgttattcaggcgacatgcaattttgt

upper sequence: GLYMA06G18400.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S123_154V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTACCCCGTCTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGGCTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgttta--aattttttatttcctattt--gcttgatgtcattt-gatttgaaaattatgtatgtgatgtatctgaacttagttccattttattgttttgcag---
  ||||| ||||  | | |||||| || |||||||| || || || || ||  |||| |||||||| |||||||| || ||||||||||||||||| ||||| |    ||    |||| | ||||   ||   | || ||   | ||| | || |    | |  || | |   ||     ||  |||||||   |  ||||   
GCTACCCAGTCTTCGAGGTGTTGTACTTCACAGTCCAATCCTTTCCGGACTTCGAGTTATGTACCCAGTGAAACGCACGTACTGGTTTGACATTTACAAGgtatgctgatgaactattccttattgcagcaacacgtaatgcaggtttcacaaattcacacggaatctcttccaaa--gcttttattttata--tgagcagacc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294431|gb|FG987360.1|FG987360
EST:     TGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAG                         AACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
genomic: TGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgtttaaattt ... tgttttgcagAACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT