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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGGAAAAATTCCTTTTGGTGAAAAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGATTCCGAGCTAAAGGCTCTCTTTGAGgtgaacctttattcttttattctggcggatgctgtcttagaattttcatgaagcatttcataccactaataatggcatgtaaatggactattttgtttgttccag

Basic information

species Glycine max
transcript GLYMA06G17250.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17250.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 5
TAAAGGAAAAATTCCTTTTGGTGAAAAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGATTCCGAGCTAAAGGCTCTCTTTGAGgtgaacct-ttattcttttattctggcggatgct-gtcttagaattttcatgaagcatttcataccactaataatggcatgtaaatggactattttgtt----tgttccag
|  | |  ||   |||| ||||||| |  |||| ||||||||||||||  |||| ||||| |||||||| |||||||| ||  ||| || ||| ||||||||     | |||||  ||||| |       || | | ||| | | | ||   |||| | |||| | |    |  ||| |  | |||  ||   | ||||    | || |||
TGCAAGTGAACACCCTTATGGTGAACACCCTTCCAGAACACTTTTTGTGCGAAATATCAACAGCAATGTTGAAGATTCAGAATTAAGGGATCTTTTTGAGgtacgtatattatttctttatcccttgaagtgtttgacttgggagtctctgcaagcttgtcat-caaagcttcttggaagttcaattaacacatatgttccattctttcag