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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattgattgattcagttgctactactactaccactactttgatctgatcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag

Basic information

species Glycine max
transcript GLYMA06G17050.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattgattgattcagttgctactactactaccactactttgatctgatcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag
|| ||  | ||||| ||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| |         |||| |  || || |   |  ||| | ||      |    || |   | | || |   |   |   ||   ||||   ||  |     |||||   |  ||  |||  | |                                          
GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAGgtactccatg---tgaattttagatcttctttgaatttacttaaatgcatagatatcg--attgtgtttgtagaaaacatgccagtttc-cctgttaccaatgaaaaattcaaacatgttacag------------------------------------------

upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattgattgattcagttgctactactactaccactactttgatctgatcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag
|| ||| | ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | | ||||| |  |  || |        ||   |   | |  |  ||    |  |||  | |||   | ||      | |  |||  | ||                                                                   
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgct---acatttgaacttcatatcttctccgagctctcatatcattcattgtattcttttttt--tttgac--actgcaaaattataatctcctgttaacag--------------------------------------------------------------

upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
lower sequence: AC207890.3_FGT002 (Zea mays), 5'ss of exon 2
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattgattgattcagttgctactactactaccactactttgatctgatcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag
|| ||  | ||||| || |||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||    | | ||||| |  |  || |   |  | ||   |   | |  |  ||    | ||||  |  ||    |     |  |  | |  ||||   |                                                                 
GCTCGCCGTGGTGGAGTTGACGAGCCCTTTGCATGGGAAAGCAGAGAGTTTCTAAGGAAGCTTTGTATAGGGAAGgtgct---acatttgaacttcatatcttctctaaactctcgtatcattcattgtattcttcctttttttggacaatgcaaaattataatctgctgttacag-----------------------------------------------------------------

upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
lower sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaat--agagttcattgattgattcagttgctactactactaccactactttgatctgatcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag
|| || ||||| ||| | || ||||| |||||||||||||||| ||| ||| ||||||| || |||||||| |||||||    ||| |  ||||  | |  ||| | ||| || || | |||| |   | |  |  || ||   ||| |||    ||  |  |||                                                                              
GCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAAAGAATTTTTGAGGAAACTTTGCATAGGAAAGgtgc----aaagtcaaaattaataactcagttatt-atacactagctattgtgagtgactatattt---tctcatctcaagtttttatttgacag-------------------------------------------------------------------------

upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattgat-tgattcagttgctactactactaccactactttgatctgatcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag
|| || ||||| ||| | || ||||| ||||||||||||||||| |||||||| |||||||| ||||| || ||||||| |||    || || |     ||| | || || |  |  |  |   | |   |    | |||     | |   ||| |     |||| | ||  ||  |                                                                 
GCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAGgtgctttg---tttaaactctttatcacttatgtgttataagttatggaattgaaaagttttcttcatattaac--agtttaaaccttttttttttcttgagcag--------------------------------------------------------------

upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgc--gttgaaaattgaaatagagttcattgattgattcagttgctactactactaccactactttgatctgatcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag
|| ||||| ||||| || || ||||||||||||||||| |||||||||| | | |||||||||||||| || |||||||   | |  ||      | |  ||  ||     ||  |       ||  ||  ||   |  ||  |||| |   | | |  |   |||   | |                                                                       
GCCCGTAGGGGTGGAGTTGATGAGCCGTTTGCATGGGACAGCAGAGAGTATTTAAGGAAGCTCTGCATTGGAAAGgtgcccatagttaacatgtttcggttttttttggctatataacattctcttttaagacagatg-ttgcatcttactcaatataatt-ctttaaatag-----------------------------------------------------------------------

upper sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattgat--tgattcagttgctactactactaccactactttgatctga-tcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag
|| |||||||||||| | || || || ||||||||||| || ||||||| | ||||||| ||||||||||| ||||||| |   | |   |  |    | | || ||  |||| |   |  |     |   ||||  | |    ||| | ||   ||| || || |||  ||    | |                                                                 
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatac-aacttttcttccttttatggtgatcctaatattctcttttgaaccatgaatcctgtcttactcagatgttgttgtattga-ttacaatag-----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18690834|gb|BM519682.1|BM519682
EST:     CGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAG                         GAAGTGACCTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTT
genomic: CGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaa ... tttggaacagGAAGTGACCTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTT
EST: gi|192321182|gb|FK014272.1|FK014272
EST:     CGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAG                         GAAGTGACCTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTT
genomic: CGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaa ... tttggaacagGAAGTGACCTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTT