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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGCTGAGCTAGTCAATGGTGCAACAAGCGAGAAGCTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAGCTAGTTGCTCATGATAAAAGgtaccaacaaagatttcatttccttatttggtgttgtttctttctgattgaatcacatgagagctaaattcatttagttttgttcataactttttatgtt...

Basic information

species Glycine max
transcript GLYMA06G16740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16740.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 5'ss of exon 1
TGGCGGCTGAGCTAGTCAATGGTGCAACAAGCGAGAAGCTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAGCTAGTTGCTCATGATAAAAGgtaccaacaaagatttcatttccttatttggtgttgtttctttctgattgaat-cacatgagagctaaattcatttagttttgttcataactttttatgtt-
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TGGCAGGGGAGCTTGTTAATTCGGCAACAAGTGAGAAGCTAACTGAAATGGATTGGACAAAAAACATTGAAATTTGTGAATTAGTTGGACGTGATCAAAGgtattattaactcactgaattctttcagttgttttaaaatatgattatgaagtatgtattattgtaggtttgatt--gctaaacccaattacttgcaagttg