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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTGTCGGAGAGATAGCGAATTTCGTGGCGTACGTTTATGCCCCCGCGGTGCTTGTCACGCCGCTTGGTGCTTTGAGTATTATTGTTAGgtaattgccaattttttattctttttttttaatattatttttctactaaattaactgttttgtgaatctggaaatggctag

Basic information

species Glycine max
transcript GLYMA06G16670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 3
TGATTGTCGGAGAGATAGCGAATTTCGTGGCGTACGTTTATGCCCCCGCGGTGCTTGTCACGCCGCTTGGTGCTTTGAGTATTATTGTTAGgtaattgccaattttttattctttttttttaatattatttttctactaaa-----ttaac------tgttttgtgaatctggaaatggctag
||||||| ||||| ||||| ||||| || || || |||| |||||| ||   |||||| ||||| |||||||| ||||| ||||||||||||||| |   | || || ||  ||||| |||  | || | ||| | |||||      ||||      ||| |  |   | ||  ||||| |||
TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAGgtaaat-ttatttcttgatgatttttcttttcttttttctttattctaaaagtttctaacaggatgtgtgtactatgtatgccaatggatag