Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatgattttctttatgattctaattctaattcatgttggggtcaattgatttgcactgtgagtttaactgtttgtgtagcttcttttgatttgtg...

Basic information

species Glycine max
transcript GLYMA06G15680.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180743|gb|HO022182.1|HO022182
EST:     CGGAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|298170767|gb|HO015743.1|HO015743
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAGGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|192322981|gb|FK016712.1|FK016712
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|192306136|gb|FG993698.1|FG993698
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTACAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|22927036|gb|BU544175.1|BU544175
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|151396812|gb|EV266685.1|EV266685
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|192306137|gb|FG993699.1|FG993699
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTACAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|192317271|gb|FK010502.1|FK010502
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|298174884|gb|HO014801.1|HO014801
EST:     CGAAAGAGATCAGAAGACTTGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|151407106|gb|EV276921.1|EV276921
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|151395463|gb|EV265340.1|EV265340
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|192317270|gb|FK010501.1|FK010501
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|192299353|gb|FG990749.1|FG990749
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|7588869|gb|AW704655.1|AW704655
EST:     CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: gi|58020226|gb|CX706968.1|CX706968
EST:     GGTGCAGCTTGGAAAGGAG                         GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: GGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatgattttctttatgattctaattctaattcatgttggggtcaattgatttgcactgtgagtttaactgtttgtgtagcttcttttgatttgtg

- - AAGAGA
- - - GAGATC
- - -  AGATCA
- - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgggg