Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag

Basic information

species Glycine max
transcript GLYMA06G15520.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag
|| || |||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || |||||||||    ||| | |  |||   |   | ||   |      | |||||     | ||| | ||||     |  | ||||  |||
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttt--taaaaaatattcac-----tttattcatgaactgt-tgctcttgatgcag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctt-tgtcttcacattgttctatccttgaatcaaatctttttgaatcag-----------
|| |||||||||||||||||||||||||| |||||||  || || ||||||||||| || || ||||| || || |||||||| |||||||| ||||| ||  |||    |||| |  || |   || | | || || |    | ||||   |  ||   ||| |   | |    ||  |              
GAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGgcatgtgtccattttctactattcaaaatgagtctttgtacacttacatctcttcattggtga-tatgaccccagtgcgttgtggcttgtgcag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtctt--aattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag----------------
|| || |||||||| || ||||||||||| |||||||| ||||| ||||| || || |||||||| || || ||||| ||||| ||||| || || |||||| ||||   | |    ||||||||  | |||| |     |  ||  |    || |   |||| || |      | ||   |                  
GAGAAGATGACCCAGATTATGTTTGAGACTTTCAATGTCCCTGCAATGTACGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatgaactcatctctgtcttttacttcaatgaggagggtttgctcaattatgcacttgtatgatccacctctgctgccatacacttttttttaat

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag
|| || ||||| || |||||||||||||||||||||   || || |||||||| || ||||||||||| || ||| | ||||| || ||||| ||||||||| ||   ||||| || | ||   ||  ||     ||    ||||   ||||        |   ||  ||||||     |||
GAGAAGATGACACAGATCATGTTTGAGACCTTCAATTGCCCAGCAATGTATGTCGCAATCCAGGCTGTTCTATCCTTGTATGCTAGCGGTCGAACAACTGgtatga--ttattacc-tttgcaatagatcgtg--ttaaaattcaatgtgttggggggcagtgacacttcttttatctgcag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaa--tcag------------------
|| |||||||| || || ||||||||||| |||||||| |||||||||||||| || ||||| || || || || || ||||| ||||| || ||||| ||| |||  |  |||  |  |  |||  |||  |||  | ||||     | ||  |||  |  ||  | |    |   |  || |                  
GAGAAAATGACACAGATTATGTTTGAGACGTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCAGTGCTTTCACTCTATGCTAGTGGCCGAACAACAGgtatgtgatgtttt--acttaacttctttctttccaatttcttggttcttttgcatctatagattcatttagatgagagctcggatgattaagaactattct

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatc-tgtcttaattcactcctttgtcttcacattgttctatccttga-atcaaatctttttgaatcag
|| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| || || ||||| || |||||||||    | |  ||  |||  || |  ||||   |      |   || ||| ||| |||      ||  | |  | ||   ||||
GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag----
|| || ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||| || || ||||| || |||||||||    |||  ||  |||       || |  |         | || ||| | | ||| |         |   | |  ||||     
GAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactcgttcacatggcgaccaaatttcattaggacttacaaattttcccatcttaattatgggttgctgttcatcattcag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttat--ttccatctgtct-----taattcactcctttgtcttca--cattgttctatccttgaatcaaatctttttgaatcag---------
|| || ||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| || || ||||| || ||||| ||||| || || |||||| ||  || ||  |||| |  || |     | ||||| |    |   |  |   |   |  | || ||||  | ||| |  |    |||          
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctgatccttcctttagtttggcgttgattcagtttcatagttctagctagcatcatctctttgatcccaatatgctgttgtcaactgtttatc

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag----------------------
||||| ||||| |||||||||||||| ||||||| ||| ||||| |||||||| || || || ||||| || ||||||||||| ||||| || || ||||||  ||  | |     ||     | | || | |  | ||  ||||  |||||        |  |  ||||||  | |  |||                      
GAAAAGATGACACAAATCATGTTTGAAACCTTCAGTGTTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCCCTATATGCTAGTGGCCGTACCACTGgtaagtgatcaa----ataatcatcattttatttgtgtgcattcatcttgttgctctggagtctggaatcttaatcatccagcagaactgaattgaccaatggt

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttat-------ttccatctgtcttaattcactcctttgtcttcacattgttctatcc--ttgaatcaaatctttttgaatcag---------
|| || ||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| || || || || || ||||| ||||| || || |||||| ||  || ||       || | |  |  || ||||| |    |   |  |  | |    |||   ||||  | ||| |  |    |||          
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctgatccttcctttactttggcgttgattcagtttcatagttctagctagcaacatctctttgatcccaatatgctgttgtcaactgtttatc

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgt-cttaattcactcctttgtcttcacattgttctatccttgaatca-aatctttt-tgaatcag------------------
||||| ||||| |||||||||||||| || |||| ||| ||||| |||||||| || || || |||||||| ||||| ||||| ||||| || || ||||||  ||  | |  |  ||| |   || |||||      |   ||    |||  ||   || |||||  |||||  | | ||  ||                  
GAAAAGATGACACAAATCATGTTTGAAACTTTCAGTGTTCCTGCTATGTATGTTGCTATTCAAGCTGTCCTTTCCCTTTATGCTAGTGGCCGTACCACTGgtaagtgatcaaata-atcagcattttattcatgtacattctttttttttg--ctgctctggaatcttaatctagtataaactagttgaccaaaggtgaaata

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtc-ttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag---------------------------------
|| || ||||||||||| ||||| ||||| |||||||  || || |||||||| || ||||| |||||||| ||||| ||||| || |||||||| || ||   ||    | || || || |  ||||     | ||  | |  |   |     | || |        ||||      | ||                                  
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G437445_T01 (Zea mays), 5'ss of exon 4
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgt-acttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag
|| || |||||||| || ||||| ||||| |||||    || || |||||||||||||||||||| || || ||||| || || |||||||| ||||| ||| ||| |||   ||  |||||| | |  |||    |          || ||    ||  |||    ||||||| || |    
GAGAAGATGACCCAGATTATGTTCGAGACATTCAACTGCCCAGCAATGTATGTGGCCATCCAGGCCGTTCTTTCCCTGTACGCCAGTGGTCGAACAACGGgtatgttactgcattaaatctgtttcatatcagcattcaaata----atagtgtagtcagtgataggaatctttctgcag---

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattca--ctcctttgtcttcacattgttctatccttgaatcaaatct--ttttgaatcag
|| || ||||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||| || || || || ||||| |||||||| ||||| |||| || ||||  || |    ||  | |      |   || |||||  | |  | | | ||| ||     |||  ||||| | |||
GAGAAGATGACTCAGATCATGTTTGAGACATTCAATGTCCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag
|| || ||||| |||||||||||||||||||| ||    || || |||||||| |||||||| ||||| |||||| | || || |||||||| ||||| |||| ||||  ||||    || | |   |  |||| ||  || | |  |||  ||   ||   || |  |    ||||| |||
GAGAAGATGACTCAAATCATGTTTGAGACCTTTAACTCTCCCGCTATGTATGTCGCCATCCAAGCTGTTCTCTCCTTGTACGCCAGTGGTCGTACAACCGgttagtac--attttaggctttttgtttatactcattgatcattat-ttgaactgagctctgattatcttccattgaa-cag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 4
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaa----ttcactcctttgtcttcacattgttctatccttgaatcaaat---ctttttgaatcag
||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||||| |||||||| || || |||||||| ||||| || |||||||||| ||| | |  ||  | ||  ||      |||| |  | | |  |    ||  | || |||    || ||    ||  ||  |  ||
GAAAAGATGACTCAAATCATGTTTGAGACTTTTAATGTGCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTCTATATGCCAGTGGGCGTACAACTGgttcgtattaaaatctttttggattggaattttcatttttcttttctgttgttagtgtagcctgagttctaacttgctcctttgactag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 5'ss of exon 5
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGC-ACAACTGgtttgtacttatttccatctgtcttaattca-ctcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag
               |||||||| ||||||||||| ||||| |||||||| ||||| |||||||                ||  || |||||  ||| | |  |           |     | |      || |  |     |   ||| |     |  |    |  | | |  |  |      
---------------ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAGg----------------tgagagaggtcgagacagcggagtaacggccgcggcatcgcggcacgcggcagcagcccgagccggacagtaaggcaggcccatacaacagcggtcggc-----

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttc------catctgtcttaa---------ttcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag-----------------------------------------------------
|| || |||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||| || ||||| || || || || ||||| ||||| || ||| || | || |||           |||  ||          || |  | | | ||||  | | |||   | |   |  ||      ||  | |  |                                                     
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCGATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagtttttttatcccttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttgtttttccctctaacacgttgtatgatcgtggtttgtgatcag

upper sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatc-------tgtcttaa---------ttcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag------------------------------------------------------
|| || |||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||| || ||||| || || || || ||||| ||||| || ||| || | || |||   ||       |||  ||          || |  | | | ||||  | | |||   | |   |  ||      ||  | |  |                                                      
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCAATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagttttttttttcctttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttttttcttctctctaacacgttgtatgatcgtggtttgtgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726695|gb|AW311040.1|AW311040
EST:     TGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtactt ... tttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATG